Escherichia coli RHB09-C18 |
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Putative Escherichia coli RHB09-C18 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,767,601 bp | CP057936 |
| plasmid pRHB09-C18_2: | 97,047 bp | CP057937 |
REBASE acronym: Eco09C18
Org_num: 43455
All begin HVW32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19565 | adenine/cytosine-specific restriction | |||
| 19570 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco09C18ORF19575P |
| 19575 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco09C18ORF19575P |
| 19580 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.Eco09C18ORF19575P |
| 19585 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1705 | cell division protein DamX | |||
| 1710 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco09C18DamP |
| 1715 | ribulose-phosphate 3-epimerase | |||
| 2330 | DUF2556 family protein | |||
| 2335 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco09C18ORF2335P |
| 2340 | DNA-binding transcriptional regulator Fis | |||
| 8940 | phosphohydrolase | |||
| 8945 | M | M.EcoD6117DcmP (100% identity) | CCWGG | M.Eco09C18DcmP |
| 8950 | V | V.SsoSE61DcmP (100% identity) | V.Eco09C18DcmP | |
| 8955 | drug/metabolite exporter YedA | |||
| 10930 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco09C18ORF10935P | |
| 10940 | IS66-like element ISEc23 family transposase | |||
| 13325 | LexA family transcriptional regulator | |||
| 13330 | M | M.EcofEC1ORF8685P (100% identity) | GATC | M.Eco09C18ORF13330P |
| 13335 | PerC family transcriptional regulator | |||
| plasmid pRHB09-C18_2 | ||||
| 23475 | SPFH/Band 7/PHB domain protein | |||
| 23490 | M | M.Efe9LTORF44210P (100% identity) | M.Eco09C18ORF23490P | |
| 23495 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19560 | GTPase | |||
| 19565 | R | Ssp28760MrrP (100% identity) | Eco09C18MrrP | |
| 19570 | type I restriction-modification system | |||
| 19585 | endoribonuclease SymE | |||
| 19590 | R | Ssp28760McrBP (100% identity) | Eco09C18McrBP | |
| 19595 | R | Ssp28760McrCP (100% identity) | Eco09C18McrCP | |
| 19600 | DUF1998 domain-containing protein | |||