Escherichia coli RHB09-C22 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHB09-C22 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,801,723 bp | CP057930 |
| plasmid pRHB09-C22_2: | 98,472 bp | CP057931 |
REBASE acronym: Eco09C22
Org_num: 43457
All begin HVW35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19670 | 322 aa hypothetical protein | |||
| 19675 | R | SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | Eco09C22ORF19680P |
| 19680 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.Eco09C22ORF19680P |
| 19685 | S | S.SflN101ORF11675P (100% identity) | CCANNNNNNNNNTTGG | S.Eco09C22ORF19680P |
| 19690 | endoribonuclease SymE | |||
| 19890 | 128 aa hypothetical protein | |||
| 19895 | M | M.EcoVCSW8ORF19350P (100% identity) | TGHAYNNNNCTNC | M.Eco09C22ORF19895P |
| 19900 | S | S.SflFF71ORF17365P (100% identity) | TGHAYNNNNCTNC | S.Eco09C22ORF19895P |
| 19905 | 428 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 445 | DUF4007 family protein | |||
| 450 | M | M.Eco47C06SspCP (99% identity) | M.Eco09C22SspCP | |
| 455 | phosphoadenosine phosphosulfate reductase family | |||
| 1885 | cell division protein DamX | |||
| 1890 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco09C22DamP |
| 1895 | ribulose-phosphate 3-epimerase | |||
| 2415 | DUF2556 family protein | |||
| 2420 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco09C22ORF2420P |
| 2425 | DNA-binding transcriptional regulator Fis | |||
| 8865 | phosphohydrolase | |||
| 8870 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.Eco09C22DcmP |
| 8875 | V | V.EcoSCU109DcmP (100% identity) | V.Eco09C22DcmP | |
| 8880 | drug/metabolite exporter YedA | |||
| 14925 | replication endonuclease | |||
| 14930 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Eco09C22ORF14930P |
| 14935 | TraR/DksA family transcriptional regulator | |||
| plasmid pRHB09-C22_2 | ||||
| 23225 | 73 aa hypothetical protein | |||
| 23230 | M | M.Eco20E3C07ORF23755P (100% identity) | M.Eco09C22ORF23230P | |
| 23235 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19690 | endoribonuclease SymE | |||
| 19695 | R | SflWW1GmrSDP (100% identity) | Eco09C22GmrSDP | |
| 19700 | DUF1127 domain-containing protein | |||
| 19875 | HNH endonuclease | |||
| 19880 | R | SflN101McrBP (100% identity) | Eco09C22McrBP | |
| 19885 | R | EcoVCSW8McrCP (100% identity) | Eco09C22McrCP | |
| 19890 | 128 aa hypothetical protein | |||