Escherichia coli RHB10-C12 |
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Putative Escherichia coli RHB10-C12 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,452,986 bp | CP057906 |
| plasmid pRHB10-C12_2: | 102,859 bp | CP057907 |
| plasmid pRHB10-C12_3: | 99,967 bp | CP057908 |
| plasmid pRHB10-C12_4: | 63,800 bp | CP057909 |
REBASE acronym: Eco10C12
Org_num: 43463
All begin HVW43_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1395 | 354 aa hypothetical protein | |||
| 1400 | M | M.EcoPS103ORF9180P (100% identity) | M.Eco10C12ORF1400P | |
| 1405 | S | S.EcoPS103ORF9180P (100% identity) | S.Eco10C12ORF1400P | |
| 1410 | YecA family protein | |||
| 1415 | cold shock domain-containing protein | |||
| 1420 | R | EcoRG065ORF1045P (100% identity) | Eco10C12ORF1400P | |
| 1425 | M48 family metallopeptidase | |||
| 13255 | adenine/cytosine-specific restriction | |||
| 13260 | R | EcoES5ORF3915P (100% identity) | Eco10C12ORF13265P | |
| 13265 | M | M.EcoES5ORF3915P (99% identity) | M.Eco10C12ORF13265P | |
| 13270 | S | S.EcoW102ORF20700P (62% identity) | S.Eco10C12ORF13265P | |
| 13275 | endoribonuclease SymE | |||
| plasmid pRHB10-C12_4 | ||||
| 27345 | 104 aa hypothetical protein | |||
| 27350 | M | M.Eco3234AORF10P (100% identity) | M.Eco10C12ORF27350P | |
| 27355 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1100 | phosphohydrolase | |||
| 1105 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.Eco10C12DcmP |
| 1110 | V | V.EcoPS103DcmP (100% identity) | V.Eco10C12DcmP | |
| 1115 | drug/metabolite exporter YedA | |||
| 3260 | TrmB family transcriptional regulator | |||
| 3265 | M | M.EspP049ORF1957P (100% identity) | M.Eco10C12ORF3265P | |
| 3270 | 92 aa hypothetical protein | |||
| 5225 | holin | |||
| 5235 | M | M.Eco11C16ORF8075P (98% identity) | M.Eco10C12ORF5235P | |
| 5240 | TrmB family transcriptional regulator | |||
| 11075 | phage lysis protein EssD | |||
| 11080 | M | M.Sso63633ORF22290P (100% identity) | M.Eco10C12ORF11080P | |
| 11085 | TrmB family transcriptional regulator | |||
| 11115 | LexA family transcriptional regulator | |||
| 11120 | M | M.KpnHs33ORF24645P (100% identity) | GATC | M.Eco10C12ORF11120P |
| 11125 | PerC family transcriptional regulator | |||
| 13010 | RusA family crossover junction | |||
| 13015 | M | M.EcosA32ORF3630P (100% identity) | GATC | M.Eco10C12ORF13015P |
| 13020 | PerC family transcriptional regulator | |||
| 13480 | HNH endonuclease | |||
| 13485 | R | EcoC6335ORF21785P (99% identity) | Eco10C12ORF13485P | |
| 13490 | 59 aa hypothetical protein | |||
| 18330 | cell division protein DamX | |||
| 18335 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco10C12DamP |
| 18340 | ribulose-phosphate 3-epimerase | |||
| 18860 | DUF2556 family protein | |||
| 18865 | M | M.SflWW1ORF2205P (100% identity) | ATGCAT | M.Eco10C12ORF18865P |
| 18870 | DNA-binding transcriptional regulator Fis | |||
| 19905 | DEAD/DEAH box helicase | |||
| 19910 | RM | Eco10C19ORF3320P (100% identity) | Eco10C12ORF19910P | |
| 19915 | IS110 family transposase | |||
| plasmid pRHB10-C12_2 | ||||
| 26675 | 73 aa hypothetical protein | |||
| 26680 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco10C12ORF26680P | |
| 26685 | 103 aa hypothetical protein | |||
| plasmid pRHB10-C12_3 | ||||
| 26935 | 103 aa hypothetical protein | |||
| 26940 | M | M.Sso8ORF23800P (100% identity) | SAY | M.Eco10C12ORF26940P |
| 26945 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13250 | GTPase | |||
| 13255 | R | Ssp28760MrrP (100% identity) | Eco10C12MrrP | |
| 13260 | type I restriction-modification system | |||
| 13275 | endoribonuclease SymE | |||
| 13280 | R | EcoPS103McrBP (99% identity) | Eco10C12McrBP | |
| 13285 | R | EcoA30McrCP (99% identity) | Eco10C12McrCP | |