Escherichia coli RHB12-C04 |
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Putative Escherichia coli RHB12-C04 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,875,664 bp | CP057869 |
| plasmid pRHB12-C04_2: | 72,463 bp | CP057870 |
REBASE acronym: Eco12C04
Org_num: 43476
All begin HVW62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3470 | integrase arm-type DNA-binding domain-containing | |||
| 3475 | M | M.Eco20E4C04ORF3555P (99% identity) | M.Eco12C04ORF3475P | |
| 3480 | AAA family ATPase | |||
| 3485 | ATP-dependent helicase | |||
| 3490 | S | S.SflFF87ORF3230P (62% identity) | S.Eco12C04ORF3475P | |
| 3495 | R | EcoCLSC36ORF4870P (98% identity) | Eco12C04ORF3475P | |
| 3500 | 72 aa hypothetical protein | |||
| 9420 | tyrosine-type recombinase/integrase | |||
| 9425 | R | EcoXJ63ORF9345P (100% identity) | Eco12C04ORF9425P | |
| 9430 | M48 family metallopeptidase | |||
| 19635 | adenine/cytosine-specific restriction | |||
| 19640 | R | EcoXJ63ORF19820P (100% identity) | AACNNNNNNGTGC | Eco12C04ORF19645P |
| 19645 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco12C04ORF19645P |
| 19650 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco12C04ORF19645P |
| 19655 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1825 | cell division protein DamX | |||
| 1830 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco12C04DamP |
| 1835 | ribulose-phosphate 3-epimerase | |||
| 2355 | DUF2556 family protein | |||
| 2360 | M | M.EcoXJ63ORF2395P (100% identity) | ATGCAT | M.Eco12C04ORF2360P |
| 2365 | DNA-binding transcriptional regulator Fis | |||
| 9100 | phosphohydrolase | |||
| 9105 | M | M.EcoXJ63DcmP (100% identity) | CCWGG | M.Eco12C04DcmP |
| 9110 | V | V.SsoSE61DcmP (100% identity) | V.Eco12C04DcmP | |
| 9115 | drug/metabolite exporter YedA | |||
| 14970 | replication endonuclease | |||
| 14975 | M | M.Eco39C21ORF15550P (100% identity) | GATC | M.Eco12C04ORF14975P |
| 14980 | TraR/DksA family transcriptional regulator | |||
| 21975 | phage portal protein | |||
| 21980 | R | Eho218ORF15P (100% identity) | Eco12C04ORF21985P | |
| 21985 | M | M.SflFF22ORF10P (100% identity) | M.Eco12C04ORF21985P | |
| 21990 | replication endonuclease | |||
| plasmid pRHB12-C04_2 | ||||
| 23265 | 73 aa hypothetical protein | |||
| 23270 | M | M.SflN92ORF24820P (100% identity) | M.Eco12C04ORF23270P | |
| 23275 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19630 | GTPase | |||
| 19635 | R | SenHNK130MrrP (100% identity) | Eco12C04Mrr2P | |
| 19640 | type I restriction-modification system | |||
| 19655 | endoribonuclease SymE | |||
| 19660 | R | SenHNK130McrBP (100% identity) | Eco12C04McrBP | |
| 19665 | R | SenHNK130McrCP (100% identity) | Eco12C04McrCP | |
| 19670 | DEAD/DEAH box helicase | |||