Escherichia coli RHB13-C13 |
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Putative Escherichia coli RHB13-C13 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,867,183 bp | CP057833 |
| plasmid pRHB13-C13_2: | 108,954 bp | CP057834 |
| plasmid pRHB13-C13_3: | 94,579 bp | CP057835 |
REBASE acronym: Eco13C13
Org_num: 43343
All begin HVW80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11825 | 322 aa hypothetical protein | |||
| 11830 | R | EcoXH993ORF23720P (100% identity) | Eco13C13ORF11835P | |
| 11835 | M | M.EcoZ503ORFCP (97% identity) | M.Eco13C13ORF11835P | |
| 11840 | S | S.Ecoa005ORF2260P (100% identity) | S.Eco13C13ORF11835P | |
| 11845 | endoribonuclease SymE | |||
| 12035 | 128 aa hypothetical protein | |||
| 12040 | M | M.EcoSTEC866ORF20040P (100% identity) | M.Eco13C13ORF12040P | |
| 12045 | S | S.EcoSTEC640ORF20915P (100% identity) | S.Eco13C13ORF12040P | |
| 12050 | 433 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 780 | phosphohydrolase | |||
| 785 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco13C13DcmP |
| 790 | V | V.SflFF64DcmP (100% identity) | V.Eco13C13DcmP | |
| 795 | drug/metabolite exporter YedA | |||
| 4745 | cell envelope integrity protein TolA | |||
| 4760 | M | M.EcoTob1ORF18280P (99% identity) | M.Eco13C13ORF4760P | |
| 4765 | TrmB family transcriptional regulator | |||
| 8790 | NinE family protein | |||
| 8795 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco13C13ORF8795P |
| 8800 | recombination protein NinB | |||
| 12015 | sialate O-acetylesterase | |||
| 12020 | R | EcoSTEC640ORF20895P (99% identity) | Eco13C13ORF12020P | |
| 12025 | AAA family ATPase | |||
| 17000 | cell division protein DamX | |||
| 17005 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco13C13DamP |
| 17010 | ribulose-phosphate 3-epimerase | |||
| 17530 | DUF2556 family protein | |||
| 17535 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco13C13ORF17535P |
| 17540 | DNA-binding transcriptional regulator Fis | |||
| plasmid pRHB13-C13_3 | ||||
| 24575 | 74 aa hypothetical protein | |||
| 24580 | M | M.SflN92ORF24820P (99% identity) | M.Eco13C13ORF24580P | |
| 24585 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12020 | HNH endonuclease | |||
| 12025 | R | SflN101McrBP (100% identity) | Eco13C13McrBP | |
| 12030 | R | SflN101McrCP (100% identity) | Eco13C13McrCP | |
| 12035 | 128 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6715 | 3-5 exoribonuclease | |||
| 6720 | M | M.EcoSCU106ORF3840P (99% identity) | M.Eco13C13ORF6720P | |
| 6725 | 103 aa hypothetical protein | |||
| plasmid pRHB13-C13_2 | ||||
| 24040 | 75 aa hypothetical protein | |||
| 24045 | M | M.Sso524ORF460P (100% identity) | M.Eco13C13ORF24045P | |
| 24050 | 269 aa hypothetical protein | |||