Escherichia coli RHB14-C16 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHB14-C16 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,508,715 bp | CP057808 |
| plasmid pRHB14-C16_2: | 132,986 bp | CP057809 |
REBASE acronym: Eco14C16
Org_num: 43349
All begin HVW95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12680 | Fic family protein | |||
| 12685 | R | Eco14C20ORF12685P (100% identity) | Eco14C16ORF12690P | |
| 12690 | M | M.Eco14C20ORF12685P (100% identity) | M.Eco14C16ORF12690P | |
| 12695 | S | S.Eco14C20ORF12685P (100% identity) | S.Eco14C16ORF12690P | |
| 12700 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3245 | phosphohydrolase | |||
| 3250 | M | M.Eco14C20DcmP (100% identity) | CCWGG | M.Eco14C16DcmP |
| 3255 | V | V.Eco14C20DcmP (100% identity) | V.Eco14C16DcmP | |
| 3260 | drug/metabolite exporter YedA | |||
| 5250 | DUF1737 domain-containing protein | |||
| 5255 | M | M.Eco14C20ORF5255P (100% identity) | M.Eco14C16ORF5255P | |
| 5260 | TrmB family transcriptional regulator | |||
| 11350 | ferrichrome porin FhuA | |||
| 11355 | R | Eco14C20ORF11355P (100% identity) | Eco14C16ORF11360P | |
| 11360 | M | M.Eco14C20ORF11355P (100% identity) | M.Eco14C16ORF11360P | |
| 11365 | bifunctional glycosyl | |||
| 12465 | LexA family transcriptional regulator | |||
| 12470 | M | M.EcoTO6ORF3546P (100% identity) | GATC | M.Eco14C16ORF12470P |
| 12475 | PerC family transcriptional regulator | |||
| 13230 | DNA-binding transcriptional regulator Fis | |||
| 13235 | M | M.Eco14C20ORF13235P (100% identity) | ATGCAT | M.Eco14C16ORF13235P |
| 13240 | DUF2556 family protein | |||
| 13760 | ribulose-phosphate 3-epimerase | |||
| 13765 | M | M.Eru07ADamP (100% identity) | GATC | M.Eco14C16DamP |
| 13770 | cell division protein DamX | |||
| 17545 | N-acetyltransferase | |||
| 17550 | M | M.EcoE69ORF11000P (100% identity) | M.Eco14C16ORF17550P | |
| 17555 | R | Eco14C20ORF17550P (100% identity) | Eco14C16ORF17550P | |
| 17565 | transcriptional regulator | |||
| 18230 | transposase | |||
| 18235 | R | R1.Eru07AORF15765P (100% identity) | GGWCC | Eco14C16ORF18235P |
| 18240 | IS256 family transposase | |||
| 18240 | IS256 family transposase | |||
| 18245 | M | M.EcoE69ORF11700P (100% identity) | GGNCC | M.Eco14C16ORF18245P |
| 18250 | R | Eco14C20ORF18245P (100% identity) | GGNCC | Eco14C16ORF18245P |
| 18255 | transposase | |||
| plasmid pRHB14-C16_2 | ||||
| 21845 | 103 aa hypothetical protein | |||
| 21850 | M | M.SflFF87ORF23240P (100% identity) | M.Eco14C16ORF21850P | |
| 21855 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 12700 | endoribonuclease SymE | |||
| 12705 | R | Eco14C20GmrSDP (100% identity) | Eco14C16GmrSDP | |
| 12710 | DUF1127 domain-containing protein | |||