Escherichia coli RHB19-C23 |
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Putative Escherichia coli RHB19-C23 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,837,389 bp | CP057640 |
| plasmid pRHB19-C23_2: | 148,666 bp | CP057641 |
REBASE acronym: Eco19C23
Org_num: 43292
All begin HVX55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20385 | DUF4942 domain-containing protein | |||
| 20390 | M | M.EcoW26ORF3070P (100% identity) | M.Eco19C23ORF20390P | |
| 20395 | S | S.EcoW26ORF3070P (100% identity) | S.Eco19C23ORF20390P | |
| 20400 | R | SdyFF10ORF20075P (100% identity) | Eco19C23ORF20390P | |
| 20410 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1670 | cell division protein DamX | |||
| 1675 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco19C23DamP |
| 1680 | ribulose-phosphate 3-epimerase | |||
| 2200 | DUF2556 family protein | |||
| 2205 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco19C23ORF2205P |
| 2210 | DNA-binding transcriptional regulator Fis | |||
| 5550 | PerC family transcriptional regulator | |||
| 5555 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.Eco19C23ORF5555P |
| 5560 | LexA family transcriptional regulator | |||
| 9025 | TrmB family transcriptional regulator | |||
| 9030 | M | M.Eco42C22ORF1045P (99% identity) | M.Eco19C23ORF9030P | |
| 9040 | holin | |||
| 9235 | phosphohydrolase | |||
| 9240 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco19C23DcmP |
| 9245 | V | V.SsoSE61DcmP (100% identity) | V.Eco19C23DcmP | |
| 9250 | drug/metabolite exporter YedA | |||
| 15205 | replication endonuclease | |||
| 15210 | M | M.EfeC03ORF21655P (99% identity) | GATC | M.Eco19C23ORF15210P |
| 15215 | TraR/DksA family transcriptional regulator | |||
| 18270 | 114 aa hypothetical protein | |||
| 18275 | M | M.Sen21974ORF23385P (99% identity) | M.Eco19C23ORF18275P | |
| 18280 | 164 aa hypothetical protein | |||
| 20360 | HNH endonuclease | |||
| 20365 | R | SdyFF10ORF20055P (100% identity) | Eco19C23ORF20365P | |
| 20370 | McrC family protein | |||
| plasmid pRHB19-C23_2 | ||||
| 24035 | 73 aa hypothetical protein | |||
| 24040 | M | M.Sen4346ORF22715P (100% identity) | M.Eco19C23ORF24040P | |
| 24045 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20365 | HNH endonuclease | |||
| 20370 | R | SdyFF10McrCP (100% identity) | Eco19C23McrCP | |
| 20375 | R | SflSTLE4McrBP (100% identity) | Eco19C23McrBP | |
| 20380 | IS3-like element IS3 family transposase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10200 | 3-5 exoribonuclease | |||
| 10205 | M | M.EcoT34ORF2715P (100% identity) | M.Eco19C23ORF10205P | |
| 10210 | 65 aa hypothetical protein | |||