Escherichia coli RHB20-C17 |
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Putative Escherichia coli RHB20-C17 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,937,982 bp | CP057626 |
| plasmid pRHB20-C17_2: | 106,559 bp | CP057627 |
REBASE acronym: Eco20C17
Org_num: 43296
All begin HVX65_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3500 | integrase arm-type DNA-binding domain-containing | |||
| 3505 | M | M.Eco20E4C04ORF3555P (100% identity) | M.Eco20C17ORF3505P | |
| 3510 | AAA family ATPase | |||
| 3515 | S | S.SflFF87ORF3230P (100% identity) | S.Eco20C17ORF3505P | |
| 3520 | R | SflFF87ORF3230P (100% identity) | Eco20C17ORF3505P | |
| 3525 | 72 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1620 | cell division protein DamX | |||
| 1625 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco20C17DamP |
| 1630 | ribulose-phosphate 3-epimerase | |||
| 2255 | DUF2556 family protein | |||
| 2260 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco20C17ORF2260P |
| 2265 | DNA-binding transcriptional regulator Fis | |||
| 5855 | PerC family transcriptional regulator | |||
| 5860 | M | M.Efe41C20ORF1660P (100% identity) | GATC | M.Eco20C17ORF5860P |
| 5865 | LexA family transcriptional regulator | |||
| 6060 | 257 aa hypothetical protein | |||
| 6065 | M | M.SflSTLE1ORF5615P (100% identity) | M.Eco20C17ORF6065P | |
| 6070 | R | Sso8033ORF3755P (100% identity) | Eco20C17ORF6065P | |
| 6075 | 121 aa hypothetical protein | |||
| 9420 | phosphohydrolase | |||
| 9425 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco20C17DcmP |
| 9430 | V | V.SsoSE61DcmP (100% identity) | V.Eco20C17DcmP | |
| 9435 | drug/metabolite exporter YedA | |||
| 13880 | phage holin, lambda family | |||
| 13885 | M | M.SflFF34ORF18205P (100% identity) | M.Eco20C17ORF13885P | |
| 13890 | TrmB family transcriptional regulator | |||
| 15880 | 70 aa hypothetical protein | |||
| 15885 | M | M.Eco300709ORFBP (100% identity) | M.Eco20C17ORF15885P | |
| 15890 | DUF2732 family protein | |||
| plasmid pRHB20-C17_2 | ||||
| 24270 | 73 aa hypothetical protein | |||
| 24275 | M | M.SflN92ORF24820P (100% identity) | M.Eco20C17ORF24275P | |
| 24280 | 101 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13715 | isocitrate dehydrogenase | |||
| 13720 | R | EcoMB19ORF20745P (100% identity) | YCGR | Eco20C17ORF13720P |
| 13725 | site-specific DNA recombinase | |||