Escherichia coli RHB21-C04 |
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Putative Escherichia coli RHB21-C04 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,939,653 bp | CP057612 |
| plasmid pRHB21-C04_2: | 89,809 bp | CP057613 |
REBASE acronym: Eco21C04
Org_num: 43300
All begin HVX71_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20420 | adenine/cytosine-specific restriction | |||
| 20425 | R | Eco42C22ORF11485P (100% identity) | Eco21C04ORF20430P | |
| 20430 | M | M.Eco40C21ORF20130P (100% identity) | M.Eco21C04ORF20430P | |
| 20435 | S | S.Eco40C21ORF20130P (100% identity) | S.Eco21C04ORF20430P | |
| 20440 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 410 | osmoprotectant transport activator ProQ | |||
| 415 | M | M.SflFF24DndBP (100% identity) | M.Eco21C04DndBP | |
| 420 | DNA phosphorothioation system sulfurtransferase | |||
| 415 | DNA sulfur modification protein DndB | |||
| 420 | M | M.SflFF24DndCP (100% identity) | M.Eco21C04DndCP | |
| 425 | DNA sulfur modification protein DndD | |||
| 420 | DNA phosphorothioation system sulfurtransferase | |||
| 425 | M | M.SflFF24DndDP (100% identity) | M.Eco21C04DndDP | |
| 430 | DNA sulfur modification protein DndE | |||
| 495 | 113 aa hypothetical protein | |||
| 500 | R | Eco35C24DptHP (100% identity) | Eco21C04DptHP | |
| 505 | DNA phosphorothioation-dependent restriction | |||
| 505 | R | SenLY67DptGP (100% identity) | Eco21C04DptGP | |
| 510 | DNA phosphorothioation-dependent restriction | |||
| 505 | DNA phosphorothioation-dependent restriction | |||
| 510 | R | SenLY67DptFP (100% identity) | Eco21C04DptFP | |
| 515 | porin family protein | |||
| 1965 | cell division protein DamX | |||
| 1970 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco21C04DamP |
| 1975 | ribulose-phosphate 3-epimerase | |||
| 2520 | DUF2556 family protein | |||
| 2525 | M | M.Eco40C21ORF2275P (100% identity) | ATGCAT | M.Eco21C04ORF2525P |
| 2530 | DNA-binding transcriptional regulator Fis | |||
| 6385 | DUF1382 family protein | |||
| 6390 | M | M.EfeC23ORF6940P (100% identity) | M.Eco21C04ORF6390P | |
| 6395 | PerC family transcriptional regulator | |||
| 9520 | phosphohydrolase | |||
| 9525 | M | M.Eco40C21DcmP (100% identity) | CCWGG | M.Eco21C04DcmP |
| 9530 | V | V.Ecostr9DcmP (74% identity) | V.Eco21C04DcmP | |
| 9535 | drug/metabolite exporter YedA | |||
| 11365 | TrmB family transcriptional regulator | |||
| 11370 | M | M.EcoV04ORF12550P (100% identity) | M.Eco21C04ORF11370P | |
| 11375 | 92 aa hypothetical protein | |||
| 15940 | NinE family protein | |||
| 15945 | M | M.Eco35C24ORF16200P (100% identity) | GATC | M.Eco21C04ORF15945P |
| 15950 | recombination protein NinB | |||
| 20640 | HNH endonuclease | |||
| 20645 | R | Ecoi362ORF3874P (100% identity) | Eco21C04ORF20645P | |
| 20650 | 59 aa hypothetical protein | |||
| 22005 | LexA family transcriptional regulator | |||
| 22010 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco21C04ORF22010P |
| 22015 | 330 aa hypothetical protein | |||
| plasmid pRHB21-C04_2 | ||||
| 24230 | 73 aa hypothetical protein | |||
| 24235 | M | M.EcoWY5172ORF23370P (100% identity) | M.Eco21C04ORF24235P | |
| 24240 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20415 | GTPase | |||
| 20420 | R | Ssp28760MrrP (100% identity) | Eco21C04MrrP | |
| 20425 | type I restriction-modification system | |||
| 20440 | endoribonuclease SymE | |||
| 20445 | R | Eco40C21McrBP (100% identity) | Eco21C04McrBP | |
| 20450 | R | Eco40C21McrCP (100% identity) | Eco21C04McrCP | |