Escherichia coli RHB27-C04 |
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Putative Escherichia coli RHB27-C04 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,681,216 bp | CP057432 |
| plasmid pRHB27-C04_2: | 96,190 bp | CP057433 |
| plasmid pRHB27-C04_3: | 52,356 bp | CP057434 |
REBASE acronym: Eco27C04
Org_num: 43086
All begin HVY40_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19425 | restriction endonuclease | |||
| 19430 | M | M.SflSTLE3ORF19325P (100% identity) | M.Eco27C04ORF19430P | |
| 19435 | S | S.SflSTLE3ORF19325P (50% identity) | S1.Eco27C04ORF19430P | |
| 19440 | IS1-like element IS1A family transposase | |||
| 19445 | S | S2.Eco27C18ORF19615P (100% identity) | S2.Eco27C04ORF19430P | |
| 19450 | R | SflSTLE3ORF19325P (100% identity) | Eco27C04ORF19430P | |
| 19455 | endoribonuclease SymE | |||
| plasmid pRHB27-C04_2 | ||||
| 23110 | DNA polymerase III subunit theta | |||
| 23115 | M | M.Eco27C18ORF23300P (100% identity) | GAANNNNNNTAYG | M.Eco27C04ORF23115P |
| 23120 | S | S.Ecoi162ORF4671P (100% identity) | GAANNNNNNTAYG | S.Eco27C04ORF23115P |
| 23125 | R | Eco34C14ORF22480P (100% identity) | GAANNNNNNTAYG | Eco27C04ORF23115P |
| 23130 | 3-phosphatase | |||
| plasmid pRHB27-C04_3 | ||||
| 23295 | IS3 family transposase | |||
| 23300 | R | SflSTLE3ORF22785P (100% identity) | Eco27C04ORF23315P | |
| 23305 | DUF4268 domain-containing protein | |||
| 23310 | S | S.Eco27C18ORF23500P (100% identity) | S.Eco27C04ORF23315P | |
| 23315 | M | M.Sen557928ORF18960P (62% identity) | M.Eco27C04ORF23315P | |
| 23320 | regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1760 | cell division protein DamX | |||
| 1765 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco27C04DamP |
| 1770 | ribulose-phosphate 3-epimerase | |||
| 2385 | DUF2556 family protein | |||
| 2390 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco27C04ORF2390P |
| 2395 | DNA-binding transcriptional regulator Fis | |||
| 3425 | DEAD/DEAH box helicase | |||
| 3430 | RM | SflLIN17ORF3140P (100% identity) | Eco27C04ORF3430P | |
| 3435 | transposase | |||
| 9065 | phosphohydrolase | |||
| 9070 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco27C04DcmP |
| 9075 | V | V.SflFF64DcmP (100% identity) | V.Eco27C04DcmP | |
| 9080 | drug/metabolite exporter YedA | |||
| plasmid pRHB27-C04_2 | ||||
| 23220 | SPFH/Band 7/PHB domain protein | |||
| 23240 | M | M.Eco34C14ORF22605P (100% identity) | M.Eco27C04ORF23240P | |
| 23245 | recombination-associated protein RdgC | |||