Escherichia coli RHB27-C20 |
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Putative Escherichia coli RHB27-C20 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,301,629 bp | CP057408 |
| plasmid pRHB27-C20_2: | 51,508 bp | CP057409 |
| plasmid pRHB27-C20_3: | 50,512 bp | CP057410 |
| plasmid pRHB27-C20_8: | 5,964 bp | CP057415 |
REBASE acronym: Eco27C20
Org_num: 43091
All begin HVY46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23310 | adenine/cytosine-specific restriction | |||
| 23315 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco27C20ORF23320P |
| 23320 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco27C20ORF23320P |
| 23325 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Eco27C20ORF23320P |
| 23330 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1740 | cell division protein DamX | |||
| 1745 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco27C20DamP |
| 1750 | ribulose-phosphate 3-epimerase | |||
| 2380 | DUF2556 family protein | |||
| 2385 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco27C20ORF2385P |
| 2390 | DNA-binding transcriptional regulator Fis | |||
| 6460 | TrmB family transcriptional regulator | |||
| 6465 | M | M.Eco38C24ORF6555P (100% identity) | M.Eco27C20ORF6465P | |
| 6480 | holin | |||
| 8040 | recombination protein NinB | |||
| 8045 | M | M.Sfl9783ORF5079P (100% identity) | M.Eco27C20ORF8045P | |
| 8050 | NinE family protein | |||
| 10795 | phosphohydrolase | |||
| 10800 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco27C20DcmP |
| 10805 | V | V.SflSTLE1DcmP (100% identity) | V.Eco27C20DcmP | |
| 10810 | drug/metabolite exporter YedA | |||
| 14695 | NinE family protein | |||
| 14700 | M | M.Sfl9783ORF5079P (100% identity) | M.Eco27C20ORF14700P | |
| 14705 | recombination protein NinB | |||
| 16385 | holin | |||
| 16400 | M | M.Eco38C24ORF16590P (100% identity) | M.Eco27C20ORF16400P | |
| 16405 | TrmB family transcriptional regulator | |||
| 18485 | replication endonuclease | |||
| 18490 | M | M.Eco38C24ORF18565P (100% identity) | GATC | M.Eco27C20ORF18490P |
| 18495 | TraR/DksA family transcriptional regulator | |||
| 20060 | NinE family protein | |||
| 20065 | M | M.Eco38C24ORF20510P (100% identity) | GATC | M.Eco27C20ORF20065P |
| 20070 | recombination protein NinB | |||
| plasmid pRHB27-C20_2 | ||||
| 26995 | recombinase family protein | |||
| 27000 | R | Ssp3CORF24390P (100% identity) | CCWGG | Eco27C20ORF27005P |
| 27005 | M | M.SflSTLE4ORF22820P (100% identity) | CCWGG | M.Eco27C20ORF27005P |
| 27010 | IS1 family transposase | |||
| plasmid pRHB27-C20_3 | ||||
| 27540 | 73 aa hypothetical protein | |||
| 27545 | M | M.Eco38C24ORF28765P (100% identity) | M.Eco27C20ORF27545P | |
| 27550 | 103 aa hypothetical protein | |||
| plasmid pRHB27-C20_8 | ||||
| 28145 | helix-turn-helix transcriptional regulator | |||
| 28150 | M | M.Eco38C24ORF29030P (100% identity) | TCCGGA | M.Eco27C20ORF28150P |
| 28155 | R | Eco38C24ORF29030P (100% identity) | TCCGGA | Eco27C20ORF28150P |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23305 | GTPase | |||
| 23310 | R | SenHNK130MrrP (100% identity) | Eco27C20MrrP | |
| 23315 | type I restriction-modification system | |||
| 23330 | endoribonuclease SymE | |||
| 23335 | R | SenHNK130McrBP (100% identity) | Eco27C20McrBP | |
| 23340 | R | SenHNK130McrCP (100% identity) | Eco27C20McrCP | |