Escherichia coli RHB28-C20 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHB28-C20 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,644,533 bp | CP057364 |
| plasmid pRHB28-C20_2: | 9,361 bp | CP057365 |
REBASE acronym: Eco28C20
Org_num: 43100
All begin HVY56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6355 | GTPase family protein | |||
| 6360 | M | M.EcoMB46ORF3445P (100% identity) | M.Eco28C20ORF6360P | |
| 6365 | S | S.SflFF64ORF3630P (71% identity) | S.Eco28C20ORF6360P | |
| 6370 | R | EcoLR641ORF28660P (99% identity) | Eco28C20ORF6360P | |
| 6375 | IS5-like element ISKpn26 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 870 | phosphohydrolase | |||
| 875 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco28C20DcmP |
| 880 | V | V.SsoSE61DcmP (100% identity) | V.Eco28C20DcmP | |
| 885 | drug/metabolite exporter YedA | |||
| 2920 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco28C20ORF2925P | |
| 2930 | 60 aa hypothetical protein | |||
| 9185 | DUF4102 domain-containing protein | |||
| 9190 | R | Sso8033ORF3755P (100% identity) | Eco28C20ORF9195P | |
| 9195 | M | M.SflSTLE1ORF5615P (100% identity) | M.Eco28C20ORF9195P | |
| 9200 | 257 aa hypothetical protein | |||
| 9395 | LexA family transcriptional regulator | |||
| 9400 | M | M.EcoSC101ORFHP (100% identity) | GATC | M.Eco28C20ORF9400P |
| 9405 | PerC family transcriptional regulator | |||
| 11375 | IS5 family transposase | |||
| 11380 | R | Eco2EC1ORF19060P (58% identity) | Eco28C20ORF11380P | |
| 11385 | integrase arm-type DNA-binding domain-containing | |||
| 16140 | cell division protein DamX | |||
| 16145 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco28C20DamP |
| 16150 | ribulose-phosphate 3-epimerase | |||
| 16775 | DUF2556 family protein | |||
| 16780 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco28C20ORF16780P |
| 16785 | DNA-binding transcriptional regulator Fis | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pRHB28-C20_2 | ||||
| 22385 | mobilization protein MobX | |||
| 22390 | R | SspM0706ORF4899P (95% identity) | Eco28C20ORF22360P | |
| 22360 | M | M.Cfr2206ORF27490P (93% identity) | M.Eco28C20ORF22360P | |