Escherichia coli RHB29-C09 |
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Putative Escherichia coli RHB29-C09 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,124,687 bp | CP057347 |
| plasmid pRHB29-C09_2: | 119,787 bp | CP057348 |
REBASE acronym: Eco29C09
Org_num: 43103
All begin HVY62_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10 | replication endonuclease | |||
| 15 | R | EcoR7ORF1275P (100% identity) | TGGCCA | Eco29C09ORF20P |
| 20 | M | M.Ecoww7ORF20P (100% identity) | TGGCCA | M.Eco29C09ORF20P |
| 25 | phage portal protein | |||
| 920 | phosphohydrolase | |||
| 925 | M | M.EcoVEV11MDcmP (100% identity) | CCWGG | M.Eco29C09DcmP |
| 930 | V | V.SflSTLE3DcmP (100% identity) | V.Eco29C09DcmP | |
| 935 | drug/metabolite exporter YedA | |||
| 2965 | DUF977 family protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco29C09ORF2970P | |
| 2975 | 60 aa hypothetical protein | |||
| 5125 | 343 aa hypothetical protein | |||
| 5130 | M | M.Eco392ORF5450P (100% identity) | M.Eco29C09ORF5130P | |
| 5135 | phage replication protein | |||
| 11265 | transposase | |||
| 11270 | R | EcoA41ORF21415P (97% identity) | GGCGGA | Eco29C09ORF11275P |
| ??? | M | M1.EcoA41ORF21415P (99% identity) | GGCGGA | M1.Eco29C09ORF11275P |
| 11280 | M | M2.EcoA41ORF21415P (100% identity) | GGCGGA | M2.Eco29C09ORF11275P |
| 11285 | conjugal transfer protein TraG N-terminal | |||
| 13455 | DNA-binding transcriptional regulator Fis | |||
| 13460 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco29C09ORF13460P |
| 13465 | DUF2556 family protein | |||
| 14010 | ribulose-phosphate 3-epimerase | |||
| 14015 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco29C09DamP |
| 14020 | cell division protein DamX | |||
| 16885 | replication endonuclease | |||
| 16890 | M | M.SenS1905ORF15P (100% identity) | M.Eco29C09ORF16890P | |
| 16895 | R | Eco4136ORFDP (100% identity) | Eco29C09ORF16890P | |
| 16900 | DUF262 domain-containing protein | |||
| 19520 | DEAD/DEAH box helicase family protein | |||
| 19525 | M | M.EcofEC1ORF1985P (100% identity) | M.Eco29C09ORF19525P | |
| 19530 | DUF3780 domain-containing protein | |||
| plasmid pRHB29-C09_2 | ||||
| 24870 | 103 aa hypothetical protein | |||
| 24875 | M | M.EcoV04ORF25795P (100% identity) | SAY | M.Eco29C09ORF24875P |
| 24880 | single-stranded DNA-binding protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5005 | isocitrate dehydrogenase | |||
| 5010 | R | EcosEC27McrCP (100% identity) | Eco29C09McrCP | |
| 5015 | R | EcoteDMcrBP (100% identity) | Eco29C09McrBP | |
| 5020 | recombinase family protein | |||