Escherichia coli RHB34-C04 |
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Putative Escherichia coli RHB34-C04 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,848,005 bp | CP057178 |
| plasmid pRHB34-C04_2: | 73,399 bp | CP057179 |
| plasmid pRHB34-C04_3: | 54,517 bp | CP057180 |
REBASE acronym: Eco34C04
Org_num: 43135
All begin HVZ20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2760 | IS5-like element ISKpn26 family transposase | |||
| 2765 | R | EcoDCE7ORF18445P (100% identity) | Eco34C04ORF2775P | |
| 2770 | S | S.EcoDCE7ORF18445P (100% identity) | S.Eco34C04ORF2775P | |
| 2775 | M | M.EcoDCE7ORF18445P (100% identity) | M.Eco34C04ORF2775P | |
| 2780 | DUF4942 domain-containing protein | |||
| 19955 | GTPase family protein | |||
| 19960 | M | M.EcoPI24ORF3560P (100% identity) | M.Eco34C04ORF19960P | |
| 19965 | S | S.Eco357ORF3710P (100% identity) | S.Eco34C04ORF19960P | |
| 19970 | R | Eco7ORF2101P (100% identity) | Eco34C04ORF19960P | |
| 19975 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2795 | IS1 family transposase | |||
| 2800 | R | EcotcmA3ORF9780P (59% identity) | Eco34C04ORF2800P | |
| 2805 | HNH endonuclease | |||
| 4530 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 4535 | R | EcoS7438ORFEP (100% identity) | Eco34C04ORF4540P | |
| 4540 | M | M.Eco8621ORF4119P (100% identity) | M.Eco34C04ORF4540P | |
| 4545 | flagellar basal body P-ring formation protein | |||
| 13780 | drug/metabolite exporter YedA | |||
| 13785 | V | V.EcoSC477DcmP (100% identity) | V.Eco34C04DcmP | |
| 13790 | M | M.EcoDCE7DcmP (100% identity) | CCWGG | M.Eco34C04DcmP |
| 13795 | phosphohydrolase | |||
| 16015 | NinE family protein | |||
| 16020 | M | M.SflN97ORF15810P (100% identity) | GATC | M.Eco34C04ORF16020P |
| 16025 | recombination protein NinB | |||
| 17065 | PerC family transcriptional regulator | |||
| 17070 | M | M.Sdy9753ORFBP (100% identity) | M.Eco34C04ORF17070P | |
| 17075 | serine/threonine protein phosphatase | |||
| 21010 | DNA-binding transcriptional regulator Fis | |||
| 21015 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco34C04ORF21015P |
| 21020 | DUF2556 family protein | |||
| 21535 | ribulose-phosphate 3-epimerase | |||
| 21540 | M | M.Eco8621DamP (100% identity) | GATC | M.Eco34C04DamP |
| 21545 | cell division protein DamX | |||
| plasmid pRHB34-C04_2 | ||||
| 24090 | 73 aa hypothetical protein | |||
| 24095 | M | M.SflN101ORF24625P (100% identity) | M.Eco34C04ORF24095P | |
| 24100 | 103 aa hypothetical protein | |||
| plasmid pRHB34-C04_3 | ||||
| 24350 | 97 aa hypothetical protein | |||
| 24355 | M | M.EcoEC488ORF26660P (99% identity) | M.Eco34C04ORF24355P | |
| 24360 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2780 | DUF4942 domain-containing protein | |||
| 2785 | R | EcoC84497McrBP (100% identity) | Eco34C04McrBP | |
| 2790 | R | EfeEF02McrC2P (42% identity) | Eco34C04McrCP | |
| 2795 | IS1 family transposase | |||