Escherichia coli RHB39-C03 |
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Putative Escherichia coli RHB39-C03 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,678,877 bp | CP057072 |
| plasmid pRHB39-C03_2: | 137,565 bp | CP057073 |
REBASE acronym: Eco39C03
Org_num: 43163
All begin HVZ79_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5360 | 197 aa hypothetical protein | |||
| 5365 | R | Rpl430IP (100% identity) | Eco39C03ORF5385P | |
| 5370 | S | S.Rpl430I (40% identity) | S2.Eco39C03ORF5385P | |
| 5375 | IS1 family transposase | |||
| 5380 | S | S.Rpl430I (60% identity) | S1.Eco39C03ORF5385P | |
| 5385 | M | M.Eko50119ORF5695P (100% identity) | M.Eco39C03ORF5385P | |
| 5390 | transposase | |||
| 19440 | IS1 family transposase | |||
| 19445 | S | S.EcoYPE10ORF21230P (46% identity) | S.Eco39C03ORF19445P | |
| 19450 | endoribonuclease SymE | |||
| 19660 | IS3-like element IS2 family transposase | |||
| 19665 | M | M.EcoYPE3ORF20380P (100% identity) | M.Eco39C03ORF19665P | |
| 19670 | S | S.EcoPC2ORF20075P (99% identity) | S.Eco39C03ORF19665P | |
| 19675 | R | EcoYPE3ORF20380P (100% identity) | Eco39C03ORF19665P | |
| 19685 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1665 | cell division protein DamX | |||
| 1670 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco39C03DamP |
| 1675 | ribulose-phosphate 3-epimerase | |||
| 2225 | DUF2556 family protein | |||
| 2230 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco39C03ORF2230P |
| 2235 | DNA-binding transcriptional regulator Fis | |||
| 8785 | phosphohydrolase | |||
| 8790 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco39C03DcmP |
| 8795 | V | V.SsoSE61DcmP (100% identity) | V.Eco39C03DcmP | |
| 8800 | drug/metabolite exporter YedA | |||
| 14585 | replication endonuclease | |||
| 14590 | M | M.EcoTO6ORF3189P (100% identity) | GATC | M.Eco39C03ORF14590P |
| 14595 | TraR/DksA family transcriptional regulator | |||
| 19635 | HNH endonuclease | |||
| 19640 | R | SflFF17ORF19275P (100% identity) | Eco39C03ORF19640P | |
| 19645 | McrC family protein | |||
| plasmid pRHB39-C03_2 | ||||
| 23370 | 327 aa hypothetical protein | |||
| 23375 | M | M.Eph2013ORF94P (98% identity) | M.Eco39C03ORF23375P | |
| 23380 | 152 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pRHB39-C03_2 | ||||
| 22870 | 101 aa hypothetical protein | |||
| 22875 | M | M.Eph2013ORF217P (98% identity) | M.Eco39C03ORF22875P | |
| 22880 | 113 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19450 | endoribonuclease SymE | |||
| 19455 | R | EcoSTEC508GmrSDP (100% identity) | Eco39C03GmrSDP | |
| 19460 | DUF1127 domain-containing protein | |||
| 19640 | HNH endonuclease | |||
| 19645 | R | EcoYPE3McrCP (100% identity) | Eco39C03McrCP | |
| 19650 | McrB family protein | |||
| 19645 | McrC family protein | |||
| 19650 | R | EcoYPE3McrBP (100% identity) | Eco39C03McrBP | |
| 19655 | DUF4942 domain-containing protein | |||