Escherichia coli RHB42-C04 |
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Putative Escherichia coli RHB42-C04 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 4,854,718 bp | CP056940 |
| plasmid pRHB42-C04_2: | 65,095 bp | CP056941 |
REBASE acronym: Eco42C04
Org_num: 43190
All begin HV017_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 420 | 184 aa hypothetical protein | |||
| 425 | R | Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | Eco42C04ORF435P |
| 430 | S | S.Ecos53ORF20340P (100% identity) | ACYNNNNNNGTTC | S.Eco42C04ORF435P |
| 435 | M | M.SenS0935ORF770P (99% identity) | ACYNNNNNNGTTC | M.Eco42C04ORF435P |
| 440 | type II toxin-antitoxin system RelB/DinJ family | |||
| 18190 | DNA-binding protein | |||
| 18195 | M | M.Eco9113I (100% identity) | M.Eco42C04ORF18195P | |
| 18200 | S | S.Eco9113I (99% identity) | S.Eco42C04ORF18195P | |
| 18205 | R | EcoHs3IIIP (100% identity) | Eco42C04ORF18195P | |
| 18210 | lactate utilization protein C | |||
| 20195 | restriction endonuclease | |||
| 20200 | M | M.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | M.Eco42C04ORF20200P |
| 20205 | S | S.Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | S.Eco42C04ORF20200P |
| 20210 | R | Ecos641ORF3050P (100% identity) | GATANNNNNNTAG | Eco42C04ORF20200P |
| 20215 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1965 | cell division protein DamX | |||
| 1970 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco42C04DamP |
| 1975 | ribulose-phosphate 3-epimerase | |||
| 2565 | DUF2556 family protein | |||
| 2570 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco42C04ORF2570P |
| 2575 | DNA-binding transcriptional regulator Fis | |||
| 9395 | phosphohydrolase | |||
| 9400 | M | M.EcoS792DcmP (100% identity) | CCWGG | M.Eco42C04DcmP |
| 9405 | V | V.SflC32DcmP (74% identity) | V.Eco42C04DcmP | |
| 9410 | drug/metabolite exporter YedA | |||
| 18255 | zinc ribbon domain-containing protein | |||
| 18260 | M | M.KpnFF77ORF20840P (100% identity) | GGTACC | M.Eco42C04ORF18260P |
| 18265 | tyrosine-type recombinase/integrase | |||
| 20390 | HNH endonuclease | |||
| 20395 | R | SflFF17ORF19275P (100% identity) | Eco42C04ORF20395P | |
| 20400 | 59 aa hypothetical protein | |||
| plasmid pRHB42-C04_2 | ||||
| 23540 | 97 aa hypothetical protein | |||
| 23545 | M | M.Eco895ORF24430P (98% identity) | M.Eco42C04ORF23545P | |
| 23550 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13680 | isocitrate dehydrogenase | |||
| 13685 | R | EcoSW4848GmrSD2P (100% identity) | Eco42C04GmrSDP | |
| 13690 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13880 | LexA family transcriptional regulator | |||
| 13885 | M | M.EcoR15ORF19935P (100% identity) | GATC | M.Eco42C04ORF13885P |
| 13890 | PerC family transcriptional regulator | |||