Escherichia coli RHBSTW-00087 |
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Putative Escherichia coli RHBSTW-00087 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
| Sequence length: | GenBank #: | |
| Chromosome: | 5,074,010 bp | CP056867 |
| plasmid pRHBSTW-00087_2: | 151,919 bp | CP056868 |
REBASE acronym: EcoW087
Org_num: 43201
All begin HV062_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4395 | DNA-binding protein | |||
| 4400 | M | M.Ecos641ORF18845P (100% identity) | M.EcoW087ORF4400P | |
| 4405 | S | S.EcoWH398ORF26840P (100% identity) | S.EcoW087ORF4400P | |
| 4410 | R | EcoR39ORF23455P (100% identity) | EcoW087ORF4400P | |
| 4415 | lactate utilization protein C | |||
| 20610 | adenine/cytosine-specific restriction | |||
| 20615 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoW087ORF20620P |
| 20620 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoW087ORF20620P |
| 20625 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoW087ORF20620P |
| 20630 | endoribonuclease SymE | |||
| 21695 | AAA family ATPase | |||
| 21700 | S | S.EcoT33ORF19320P (100% identity) | TGANNNNNNCTTC | S.EcoW087ORF21705P |
| 21705 | M | M.EcoT33ORF19320P (100% identity) | TGANNNNNNCTTC | M.EcoW087ORF21705P |
| 21710 | R | EcoT33ORF19320P (100% identity) | TGANNNNNNCTTC | EcoW087ORF21705P |
| 21715 | DUF600 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1795 | cell division protein DamX | |||
| 1800 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoW087DamP |
| 1805 | ribulose-phosphate 3-epimerase | |||
| 2395 | DUF2556 family protein | |||
| 2400 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoW087ORF2400P |
| 2405 | DNA-binding transcriptional regulator Fis | |||
| 6155 | PerC family transcriptional regulator | |||
| 6160 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoW087ORF6160P |
| 6165 | LexA family transcriptional regulator | |||
| 6960 | 82 aa hypothetical protein | |||
| 6965 | M | M.EcoSCI07ORF12405P (100% identity) | M.EcoW087ORF6965P | |
| 6970 | PerC family transcriptional regulator | |||
| 10375 | phosphohydrolase | |||
| 10380 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoW087DcmP |
| 10385 | V | V.SflC32DcmP (74% identity) | V.EcoW087DcmP | |
| 10390 | drug/metabolite exporter YedA | |||
| 13630 | DUF1737 domain-containing protein | |||
| 13650 | M | M.SboBSORF1444P (100% identity) | A | M.EcoW087ORF13650P |
| 13655 | TrmB family transcriptional regulator | |||
| 20860 | HNH endonuclease | |||
| 20865 | R | Ecoi127aORF4076P (100% identity) | EcoW087ORF20865P | |
| 20870 | 59 aa hypothetical protein | |||
| plasmid pRHBSTW-00087_2 | ||||
| 24905 | 73 aa hypothetical protein | |||
| 24910 | M | M.Sen527ORF25750P (100% identity) | M.EcoW087ORF24910P | |
| 24915 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6350 | recombinase family protein | |||
| 6355 | R | EspFAAGmrSDP (100% identity) | EcoW087GmrSDP | |
| 6360 | DinI-like family protein | |||
| 20605 | GTPase | |||
| 20610 | R | EcosS1MrrP (100% identity) | EcoW087MrrP | |
| 20615 | type I restriction-modification system | |||