Escherichia coli RHBSTW-00392 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RHBSTW-00392 RM systems
Ref: Shaw,L.P. unpublished
REBASE ref # 28537
Complete sequence: 4,844,929 bp
GenBank #: CP056564
REBASE acronym: Eco392
Org_num: 43024
All begin HV182_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 10 | replication endonuclease | |||
| 15 | R | Ecostr10ORF20P (99% identity) | GRGCYC | Eco392ORF25P |
| 20 | C | C.Sen24590ORF20925P (100% identity) | C.Eco392ORF25P | |
| 25 | M | M.EcoSC418ORFCP (100% identity) | GRGCYC | M.Eco392ORF25P |
| 30 | phage portal protein | |||
| 805 | phosphohydrolase | |||
| 810 | M | M.SflN107DcmP (100% identity) | CCWGG | M.Eco392DcmP |
| 815 | V | V.SflFF59DcmP (100% identity) | V.Eco392DcmP | |
| 820 | drug/metabolite exporter YedA | |||
| 4210 | 104 aa hypothetical protein | |||
| 4215 | M | M.EcoK88ORF1705P (96% identity) | M.Eco392ORF4215P | |
| 4220 | 77 aa hypothetical protein | |||
| 5445 | 343 aa hypothetical protein | |||
| 5450 | M | M.Eco29C23ORF5135P (100% identity) | M.Eco392ORF5450P | |
| 5455 | phage replication protein | |||
| 7130 | replication endonuclease | |||
| 7135 | M | M.EcoTH03ORF14660P (100% identity) | GATC | M.Eco392ORF7135P |
| 7140 | TraR/DksA family transcriptional regulator | |||
| 7740 | NinE family protein | |||
| 7745 | M | M.SflN97ORF15810P (100% identity) | GATC | M.Eco392ORF7745P |
| 7750 | recombination protein NinB | |||
| 12360 | site-specific integrase | |||
| 12365 | M | M.KcoCa90ORF22520P (100% identity) | M.Eco392ORF12365P | |
| 12370 | R | Tod27ORFAP (100% identity) | Eco392ORF12365P | |
| 12375 | 142 aa hypothetical protein | |||
| 17135 | cell division protein DamX | |||
| 17140 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco392DamP |
| 17145 | ribulose-phosphate 3-epimerase | |||
| 17690 | DUF2556 family protein | |||
| 17695 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco392ORF17695P |
| 17700 | DNA-binding transcriptional regulator Fis | |||
| 20935 | GTPase family protein | |||
| 20940 | R | Kae319ORF22285P (99% identity) | Eco392ORF20945P | |
| 20945 | M | M.Kae319ORF22285P (99% identity) | M.Eco392ORF20945P | |
| 20950 | NERD domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5325 | isocitrate dehydrogenase | |||
| 5330 | R | EcosEC27McrCP (100% identity) | Eco392McrCP | |
| 5335 | R | EcoteDMcrBP (100% identity) | Eco392McrBP | |
| 5340 | recombinase family protein | |||