Escherichia coli C9 |
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Putative Escherichia coli C9 RM systems
Ref: Bitar,I. unpublished
REBASE ref # 28497
| Sequence length: | GenBank #: | |
| Chromosome: | 4,999,584 bp | CP059281 |
| plasmid pC9: | 140,350 bp | CP059282 |
REBASE acronym: EcoC9B
Org_num: 42578
All begin H0272_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3085 | AAA family ATPase | |||
| 3090 | S | S.SflN116ORF3940P (100% identity) | CAAYNNNNNCTGC | S.EcoC9BORF3095P |
| 3095 | M | M.SflN116ORF3940P (100% identity) | CAAYNNNNNCTGC | M.EcoC9BORF3095P |
| 3100 | R | EcoCase6ORF480P (100% identity) | CAAYNNNNNCTGC | EcoC9BORF3095P |
| 3105 | MmcB family DNA repair protein | |||
| 9125 | ash family protein | |||
| 9130 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoC9BORF9135P |
| 9135 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoC9BORF9135P |
| 9140 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoC9BORF9135P |
| 9145 | type IV toxin-antitoxin system AbiEi family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 945 | DNA-binding transcriptional regulator Fis | |||
| 950 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoC9BORF950P |
| 955 | DUF2556 family protein | |||
| 1545 | ribulose-phosphate 3-epimerase | |||
| 1550 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC9BDamP |
| 1555 | cell division protein DamX | |||
| 6660 | 97 aa hypothetical protein | |||
| 6665 | R | Ecos19ORF20635P (100% identity) | EcoC9BORF6665P | |
| 6670 | 607 aa hypothetical protein | |||
| 6675 | ATP-binding protein | |||
| 6680 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.EcoC9BORF6680P |
| 6685 | 174 aa hypothetical protein | |||
| 6940 | helix-turn-helix domain-containing protein | |||
| 6945 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoC9BORF6945P |
| 6950 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoC9BORF6945P |
| 6955 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoC9BORF6945P |
| 6960 | McrC family protein | |||
| 17420 | drug/metabolite exporter YedA | |||
| 17425 | V | V.SflC32DcmP (74% identity) | V.EcoC9BDcmP | |
| 17430 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoC9BDcmP |
| 17435 | phosphohydrolase | |||
| plasmid pC9 | ||||
| 24285 | 102 aa hypothetical protein | |||
| 24290 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoC9BORF24290P |
| 24295 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6955 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 6960 | R | EcosS9McrCP (100% identity) | EcoC9BMcrCP | |
| 6965 | R | EcosS3McrBP (100% identity) | EcoC9BMcrBP | |
| 6970 | glycosyltransferase family 2 protein | |||