Escherichia coli CE1628 |
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Putative Escherichia coli CE1628 RM systems
Ref: Nesporova,K. et al. unpublished
REBASE ref # 30925
Complete sequence: 5,077,833 bp
GenBank #: CP053852
REBASE acronym: Eco1628
Org_num: 41978
All begin HPM96_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1530 | toll/interleukin-1 receptor domain-containing | |||
| 1535 | M | M1.EcoWW2ORF20190P (100% identity) | CCCNNNNNGTG | M1.Eco1628ORF1535P |
| 1540 | M | M2.SflLIN11ORF19980P (100% identity) | CCCNNNNNGTG | M2.Eco1628ORF1535P |
| 1545 | S | S.SflLIN11ORF19980P (100% identity) | CCCNNNNNGTG | S.Eco1628ORF1535P |
| 1550 | R | EcoWW2ORF20190P (100% identity) | CCCNNNNNGTG | Eco1628ORF1535P |
| 1555 | N-6 DNA methylase | |||
| 18285 | AAA family ATPase | |||
| 18290 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco1628ORF18295P |
| 18295 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco1628ORF18295P |
| 18300 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco1628ORF18295P |
| 18305 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1980 | PerC family transcriptional regulator | |||
| 1985 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco1628ORF1985P |
| 1990 | LexA family transcriptional regulator | |||
| 8290 | phosphohydrolase | |||
| 8295 | M | M.SspPIBDcmP (100% identity) | CCWGG | M.Eco1628DcmP |
| 8300 | V | V.EcoWW2DcmP (100% identity) | V.Eco1628DcmP | |
| 8305 | drug/metabolite exporter YedA | |||
| 15985 | PerC family transcriptional regulator | |||
| 15990 | M | M.Efe41C20ORF6615P (100% identity) | M.Eco1628ORF15990P | |
| 15995 | DUF1382 family protein | |||
| 20160 | DNA-binding transcriptional regulator Fis | |||
| 20165 | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.Eco1628ORF20165P |
| 20170 | DUF2556 family protein | |||
| 20690 | ribulose-phosphate 3-epimerase | |||
| 20695 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco1628DamP |
| 20700 | cell division protein DamX | |||