Escherichia coli WP4-S17-ESBL-03 |
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Putative Escherichia coli WP4-S17-ESBL-03 RM systems
Ref: Sekizuka,T. et al. unpublished
REBASE ref # 30911
| Sequence length: | GenBank #: | |
| Chromosome: | 5,040,845 bp | AP022044 |
| plasmid pWP4-S17-ESBL-03_1: | 148,598 bp | AP022045 |
REBASE acronym: EcoWP4
Org_num: 41996
All begin WP4S17E03_, WP4S17E03_P
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 36320 | 260 aa hypothetical protein | |||
| 36330 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoWP4ORF36340P |
| 36340 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoWP4ORF36340P |
| 36350 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoWP4ORF36340P |
| 36360 | 156 aa hypothetical protein | |||
| 40250 | 388 aa hypothetical protein | |||
| 40260 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoWP4ORF40260P |
| 40270 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoWP4ORF40260P |
| 40280 | R | Ecou021ORF19870P (99% identity) | RTACNNNNGTG | EcoWP4ORF40260P |
| 40290 | endoribonuclease SymE | |||
| plasmid pWP4-S17-ESBL-03_1 | ||||
| 11550 | 73 aa hypothetical protein | |||
| 11560 | M | M.SenceORFJP (99% identity) | M.EcoWP4ORF11560P | |
| 11570 | S | S.SenBR076ORFFP (81% identity) | S.EcoWP4ORF11560P | |
| 11580 | repressor TnpA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3370 | cell division protein DamX | |||
| 3380 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoWP4DamP |
| 3390 | ribulose-phosphate 3-epimerase | |||
| 4500 | 59 aa hypothetical protein | |||
| 4510 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoWP4ORF4510P |
| 4520 | DNA-binding protein Fis | |||
| 12620 | 64 aa hypothetical protein | |||
| 12630 | M | M.EcoF719ORF12920P (98% identity) | M.EcoWP4ORF12630P | |
| 12640 | transcriptional activator | |||
| 18580 | phosphohydrolase | |||
| 18590 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoWP4DcmP |
| 18600 | V | V.SflC32DcmP (74% identity) | V.EcoWP4DcmP | |
| 18610 | inner membrane transporter YedA | |||
| 25220 | anti-adapter protein IraM | |||
| 25230 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoWP4ORF25230P |
| 25240 | 65 aa hypothetical protein | |||
| 29630 | 118 aa hypothetical protein | |||
| 29640 | M | M.KpnYN1ORFGP (89% identity) | M.EcoWP4ORF29640P | |
| 29650 | 71 aa hypothetical protein | |||
| 39780 | Lysis protein S homolog from lambdoid prophage | |||
| 39790 | M | M.Sso63633ORF22290P (100% identity) | M.EcoWP4ORF39790P | |
| 39800 | 67 aa hypothetical protein | |||
| 39860 | LexA family transcriptional regulator | |||
| 39870 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoWP4ORF39870P |
| 39880 | 162 aa hypothetical protein | |||
| 40680 | mcrBC 5-methylcytosine restriction system | |||
| 40690 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoWP4ORF40700P |
| 40700 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoWP4ORF40700P |
| 40710 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoWP4ORF40700P |
| 40720 | 141 aa hypothetical protein | |||
| plasmid pWP4-S17-ESBL-03_1 | ||||
| 10750 | IS6 family transposase | |||
| ??? | R | YpsR2ORFAP (75% identity) | CCWGG | EcoWP4ORF10770P |
| ??? | M | M.SflLIN11ORF24665P (100% identity) | CCWGG | M.EcoWP4ORF10770P |
| 10780 | 88 aa hypothetical protein | |||
| 11680 | 308 aa hypothetical protein | |||
| 11690 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoWP4ORF11690P |
| 11700 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 40660 | insertion element IS1 1 protein InsA | |||
| 40670 | R | EcosS9McrBP (81% identity) | EcoWP4McrBP | |
| 40680 | R | EcosS9McrCP (100% identity) | EcoWP4McrCP | |
| 40690 | 579 aa hypothetical protein | |||