Escherichia coli EcPF18 |
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Putative Escherichia coli EcPF18 RM systems
Ref: Sharon,B.M. et al. unpublished
REBASE ref # 30788
| Sequence length: | GenBank #: | |
| Chromosome: | 5,010,549 bp | CP054219 |
| plasmid p1: | 128,954 bp | CP054220 |
| plasmid p2: | 86,740 bp | CP054221 |
REBASE acronym: EcoPF18
Org_num: 41486
All begin HR075_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16615 | endoribonuclease SymE | |||
| 16620 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoPF18ORF16630P |
| 16625 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoPF18ORF16630P |
| 16630 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoPF18ORF16630P |
| 16635 | restriction endonuclease | |||
| 18415 | ash family protein | |||
| 18420 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoPF18ORF18425P |
| 18425 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoPF18ORF18425P |
| 18430 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoPF18ORF18425P |
| 18435 | type IV toxin-antitoxin system AbiEi family | |||
| plasmid p1 | ||||
| 24885 | IS1 family transposase | |||
| 24890 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | EcoPF18ORF24900P |
| 24895 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.EcoPF18ORF24900P |
| 24900 | M | M.SenceORFJP (99% identity) | CAAYNNNNNCTGG | M.EcoPF18ORF24900P |
| 24905 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3405 | drug/metabolite exporter YedA | |||
| 3410 | V | V.SflC32DcmP (74% identity) | V.EcoPF18DcmP | |
| 3415 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoPF18DcmP |
| 3420 | phosphohydrolase | |||
| 10545 | DNA-binding transcriptional regulator Fis | |||
| 10550 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoPF18ORF10550P |
| 10555 | DUF2556 family protein | |||
| 11145 | ribulose-phosphate 3-epimerase | |||
| 11150 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPF18DamP |
| 11155 | cell division protein DamX | |||
| 16270 | helix-turn-helix domain-containing protein | |||
| 16275 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoPF18ORF16275P |
| 16280 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoPF18ORF16275P |
| 16285 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoPF18ORF16275P |
| 16290 | McrC family protein | |||
| 21895 | 133 aa hypothetical protein | |||
| 21900 | M | M.KpnYN1ORFGP (89% identity) | M.EcoPF18ORF21900P | |
| 21905 | helix-turn-helix transcriptional regulator | |||
| 24155 | TrmB family transcriptional regulator | |||
| 24160 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoPF18ORF24160P |
| 24175 | DUF3927 family protein | |||
| plasmid p1 | ||||
| 24825 | 73 aa hypothetical protein | |||
| 24830 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoPF18ORF24830P |
| 24835 | 102 aa hypothetical protein | |||
| plasmid p2 | ||||
| 25065 | 103 aa hypothetical protein | |||
| 25070 | M | M.SspPIBORF23080P (100% identity) | M.EcoPF18ORF25070P | |
| 25075 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3620 | SpnT protein | |||
| 3625 | M | M.EcosS2ORF3675P (100% identity) | M.EcoPF18ORF3625P | |
| 3630 | R | Ecost88ORF24685P (100% identity) | EcoPF18ORF3625P | |
| 3635 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16285 | Alw26I/Eco31I/Esp3I family type II restriction | |||
| 16290 | R | EcosS9McrCP (100% identity) | EcoPF18McrCP | |
| 16295 | R | EcosS3McrBP (100% identity) | EcoPF18McrBP | |
| 16300 | glycosyltransferase family 2 protein | |||