Escherichia coli YJ4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli YJ4 RM systems
Ref: Sugawara,Y. et al. unpublished
REBASE ref # 30654
| Sequence length: | GenBank #: | |
| Chromosome: | 4,824,195 bp | AP023230 |
| plasmid pYJ4-b: | 98,306 bp | AP023233 |
| plasmid pYJ4-NDM5: | 83,453 bp | AP023231 |
REBASE acronym: EcoYJ4
Org_num: 40989
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | M | M.EcoM505ORFEP (100% identity) | AAAYNNNNNNCTC | M.EcoYJ4ORFEP |
| ??? | S | S.Sfl877II (100% identity) | AAAYNNNNNNCTC | S.EcoYJ4ORFEP |
| ??? | R | Sfl877IIP (100% identity) | AAAYNNNNNNCTC | EcoYJ4ORFEP |
| ??? | R | EcoYJ3ORFBP (100% identity) | EcoYJ4ORFDP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| ??? | M | M.SsoCS14ORF10750P (100% identity) | A | M.EcoYJ4ORFAP |
| ??? | M | M.EcoM719ORF724P (100% identity) | M.EcoYJ4ORFHP | |
| ??? | R | SflSTLE4ORF19250P (100% identity) | EcoYJ4ORFBP | |
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoYJ4DamP |
| ??? | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoYJ4ORFCP |
| ??? | DNA sulfur modification protein DndB | |||
| ??? | M | M.SflFF24DndCP (100% identity) | M.EcoYJ4DndCP | |
| ??? | Sulphur transferase DndC, putative | |||
| ??? | M | M.SflFF24DndBP (100% identity) | M.EcoYJ4DndBP | |
| ??? | Sulphur transferase DndC, putative | |||
| ??? | Sulphur transferase DndC, putative | |||
| ??? | M | M.EcoW56DndDP (100% identity) | M.EcoYJ4DndDP | |
| ??? | DNA sulfur modification protein DndE | |||
| ??? | Sulphur transferase DndC, putative | |||
| ??? | M | M.SflFF24DndEP (100% identity) | M.EcoYJ4DndEP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| ??? | M | M.SflFF24DndDP (100% identity) | M.EcoYJ4DndD2P | |
| ??? | DNA sulfur modification protein DndE | |||
| ??? | R | EcosEC5DptHP (100% identity) | EcoYJ4DptHP | |
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| ??? | R | SflFF24DptGP (100% identity) | EcoYJ4DptGP | |
| ??? | dnd system-associated protein 2 | |||
| ??? | DNA phosphorothioation-dependent restriction protein DptH | |||
| ??? | R | SflFF24DptFP (100% identity) | EcoYJ4DptFP | |
| ??? | M | M.Kpn75ORF17070P (100% identity) | M.EcoYJ4ORFGP | |
| ??? | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoYJ4DcmP |
| ??? | V | V.EcoMN067DcmP (100% identity) | V.EcoYJ4DcmP | |
| plasmid pYJ4-b | ||||
| ??? | M | M.Ecoppa8ORF25725P (96% identity) | M.EcoYJ4ORFIP | |
| plasmid pYJ4-NDM5 | ||||
| ??? | M | M.SenST46ORF25580P (100% identity) | M.EcoYJ4ORFJP | |