Escherichia coli SCU-488 |
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Putative Escherichia coli SCU-488 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30384
| Sequence length: | GenBank #: | |
| Chromosome: | 5,065,998 bp | CP054449 |
| plasmid pSCU-488-1: | 160,124 bp | CP054450 |
REBASE acronym: EcoSCU488
Org_num: 40722
All begin HPE47_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6230 | adenine/cytosine-specific restriction | |||
| 6235 | R | Eco1386aORF12940P (99% identity) | CCANNNNNNNCTTC | EcoSCU488ORF6240P |
| 6240 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoSCU488ORF6240P |
| 6245 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoSCU488ORF6240P |
| 6250 | endoribonuclease SymE | |||
| 13675 | IS110 family transposase | |||
| 13680 | M | M.Mmo48659ORF2735P (100% identity) | M.EcoSCU488ORF13680P | |
| 13685 | AAA family ATPase | |||
| 13690 | S | S.Mmo48659ORF2735P (100% identity) | S.EcoSCU488ORF13680P | |
| 13695 | R | EcoW004ORF12170P (99% identity) | EcoSCU488ORF13680P | |
| 13700 | 60 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 185 | NinE family protein | |||
| 190 | M | M.EcoPSJ14ORF29270P (92% identity) | GATC | M.EcoSCU488ORF190P |
| 195 | recombination protein NinB | |||
| 6490 | HNH endonuclease | |||
| 6495 | R | Ecoi127aORF4076P (100% identity) | EcoSCU488ORF6495P | |
| 6500 | 59 aa hypothetical protein | |||
| 8270 | class II holin family protein | |||
| 8275 | M | M.Sso63633ORF22290P (100% identity) | M.EcoSCU488ORF8275P | |
| 8280 | 67 aa hypothetical protein | |||
| 8310 | LexA family transcriptional regulator | |||
| 8315 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoSCU488ORF8315P |
| 8320 | 330 aa hypothetical protein | |||
| 12065 | cell division protein DamX | |||
| 12070 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCU488DamP |
| 12075 | ribulose-phosphate 3-epimerase | |||
| 12665 | DUF2556 family protein | |||
| 12670 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSCU488ORF12670P |
| 12675 | DNA-binding transcriptional regulator Fis | |||
| 16430 | PerC family transcriptional regulator | |||
| 16435 | M | M.EcoY26ORF4515P (100% identity) | GATC | M.EcoSCU488ORF16435P |
| 16440 | LexA family transcriptional regulator | |||
| 20480 | phosphohydrolase | |||
| 20485 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoSCU488DcmP |
| 20490 | V | V.EcosC25DcmP (100% identity) | V.EcoSCU488DcmP | |
| 20495 | drug/metabolite exporter YedA | |||
| 23765 | 72 aa hypothetical protein | |||
| ??? | M | M.EcoX675ORF15705P (69% identity) | M.EcoSCU488ORF23785P | |
| 23795 | TrmB family transcriptional regulator | |||
| plasmid pSCU-488-1 | ||||
| 24740 | 73 aa hypothetical protein | |||
| 24745 | M | M.Sfl2142ORF380P (100% identity) | M.EcoSCU488ORF24745P | |
| 24750 | 104 aa hypothetical protein | |||
| 25190 | 73 aa hypothetical protein | |||
| 25195 | M | M.EcoEcC106ORFAP (100% identity) | M.EcoSCU488ORF25195P | |
| 25200 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6225 | GTPase | |||
| 6230 | R | EcosS1MrrP (100% identity) | EcoSCU488MrrP | |
| 6235 | type I restriction-modification system | |||
| 16630 | recombinase family protein | |||
| 16635 | R | EspFAAGmrSDP (99% identity) | EcoSCU488GmrSDP | |
| 16640 | DinI-like family protein | |||