Escherichia coli SCU-479 |
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Putative Escherichia coli SCU-479 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,191,256 bp | CP054317 |
| plasmid pSCU-479-1: | 112,169 bp | CP054318 |
REBASE acronym: EcoSCU479
Org_num: 40287
All begin HHJ50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18335 | transcription factor | |||
| 18340 | M | M.EcosE2ORF13465P (99% identity) | M.EcoSCU479ORF18340P | |
| 18345 | S | S.EcosE2ORF13465P (58% identity) | S1.EcoSCU479ORF18340P | |
| 18350 | S | S.Ecos38ORF13490P (21% identity) | S2.EcoSCU479ORF18340P | |
| 18355 | DUF4433 domain-containing protein | |||
| 18360 | macro domain-containing protein | |||
| 18365 | R | Sbo49812IP (99% identity) | EcoSCU479ORF18340P | |
| 18370 | M48 family metallopeptidase | |||
| 19630 | GTPase family protein | |||
| 19635 | M | M.EcosS1ORF17110P (100% identity) | M.EcoSCU479ORF19635P | |
| 19640 | S | S.EcosEC2ORF13930P (94% identity) | S.EcoSCU479ORF19635P | |
| 19645 | R | EcosEC2ORF13930P (100% identity) | EcoSCU479ORF19635P | |
| 19650 | 75 aa hypothetical protein | |||
| 24600 | DUF262 domain-containing protein | |||
| 24605 | M | M.EcoZ247ORF19790P (100% identity) | M.EcoSCU479ORF24605P | |
| 24610 | S | S.EcoZ247ORF19790P (99% identity) | S.EcoSCU479ORF24605P | |
| 24615 | R | EcoZ247ORF19790P (99% identity) | EcoSCU479ORF24605P | |
| 24620 | DUF1127 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 115 | IS630 family transposase | |||
| 120 | M | M.EcoSCU483ORF11515P (96% identity) | M.EcoSCU479ORF120P | |
| 125 | histidine kinase | |||
| 140 | 126 aa hypothetical protein | |||
| 145 | R | Ecos19ORF20635P (100% identity) | EcoSCU479ORF145P | |
| 150 | 97 aa hypothetical protein | |||
| 5430 | cell division protein DamX | |||
| 5435 | M | M.SspPIBDamP (99% identity) | GATC | M.EcoSCU479DamP |
| 5440 | ribulose-phosphate 3-epimerase | |||
| 6030 | DUF2556 family protein | |||
| 6035 | M | M.EcoBone8ORF11110P (100% identity) | ATGCAT | M.EcoSCU479ORF6035P |
| 6040 | DNA-binding transcriptional regulator Fis | |||
| 13040 | phosphohydrolase | |||
| 13045 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoSCU479DcmP |
| 13050 | V | V.SflC32DcmP (72% identity) | V.EcoSCU479DcmP | |
| 13055 | drug/metabolite exporter YedA | |||
| 19085 | helix-turn-helix domain-containing protein | |||
| 19090 | M | M.KaeCRE8ORF15605P (100% identity) | M.EcoSCU479ORF19090P | |
| 19095 | 71 aa hypothetical protein | |||
| 24845 | HNH endonuclease | |||
| 24850 | R | Ecos19ORF20235P (99% identity) | EcoSCU479ORF24850P | |
| 24855 | DEAD/DEAH box helicase family protein | |||
| plasmid pSCU-479-1 | ||||
| 25175 | 103 aa hypothetical protein | |||
| 25180 | M | M.EcoTX1999ORF1306P (96% identity) | SAY | M.EcoSCU479ORF25180P |
| 25185 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24850 | HNH endonuclease | |||
| 24855 | R | Sen7832IVP (82% identity) | EcoSCU479ORF24860P | |
| 24860 | M | M.Ecos19ORF20250P (46% identity) | M1.EcoSCU479ORF24860P | |
| 24865 | M | M.Ecos19ORF20250P (42% identity) | M2.EcoSCU479ORF24860P | |
| 24870 | DEAD/DEAH box helicase family protein | |||