Escherichia coli SCU-172 |
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Putative Escherichia coli SCU-172 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30384
| Sequence length: | GenBank #: | |
| Chromosome: | 5,170,495 bp | CP054353 |
| plasmid pSCU-172-1: | 82,764 bp | CP054354 |
| plasmid pSCU-172-3: | 75,628 bp | CP054356 |
REBASE acronym: EcoSCU172
Org_num: 40280
All begin HPE50_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2900 | NADPH-dependent aldehyde reductase Ahr | |||
| 2910 | M | M.Eho76201ORFBP (97% identity) | CCGCGG | M.EcoSCU172ORF2910P |
| 2915 | R | EcoR49ORF26410P (100% identity) | CCGCGG | EcoSCU172ORF2910P |
| 2920 | recombinase family protein | |||
| 8480 | PerC family transcriptional regulator | |||
| 8485 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoSCU172ORF8485P |
| 8490 | LexA family transcriptional regulator | |||
| 9915 | phosphohydrolase | |||
| 9920 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoSCU172DcmP |
| 9925 | V | V.SflC32DcmP (74% identity) | V.EcoSCU172DcmP | |
| 9930 | drug/metabolite exporter YedA | |||
| 14075 | DUF1737 domain-containing protein | |||
| 14095 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoSCU172ORF14095P |
| 14100 | TrmB family transcriptional regulator | |||
| 19505 | DUF3850 domain-containing protein | |||
| 19510 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoSCU172ORF19510P |
| 19515 | replication endonuclease | |||
| 22915 | DNA-binding transcriptional regulator Fis | |||
| 22920 | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.EcoSCU172ORF22920P |
| 22925 | DUF2556 family protein | |||
| 23450 | ribulose-phosphate 3-epimerase | |||
| 23455 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCU172DamP |
| 23460 | cell division protein DamX | |||
| plasmid pSCU-172-1 | ||||
| 25585 | 104 aa hypothetical protein | |||
| 25590 | M | M.Sso866ORF27155P (100% identity) | M.EcoSCU172ORF25590P | |
| 25595 | 73 aa hypothetical protein | |||
| plasmid pSCU-172-3 | ||||
| 26515 | 103 aa hypothetical protein | |||
| 26520 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoSCU172ORF26520P |
| 26525 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3235 | DEAD/DEAH box helicase family protein | |||
| 3240 | M | M.EcoS536ORF22110P (100% identity) | M.EcoSCU172ORF3240P | |
| 3245 | R | EcoR71ORF22205P (100% identity) | EcoSCU172ORF3240P | |
| 3250 | 100 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16030 | 3-5 exoribonuclease | |||
| 16035 | M | M.EcoR35ORF12465P (100% identity) | M.EcoSCU172ORF16035P | |
| 16040 | DUF4406 domain-containing protein | |||