Escherichia coli SCU-176 |
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Putative Escherichia coli SCU-176 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30384
| Sequence length: | GenBank #: | |
| Chromosome: | 5,023,098 bp | CP054345 |
| plasmid pSCU-176-6: | 3,896 bp | CP054351 |
REBASE acronym: EcoSCU176
Org_num: 40282
All begin HPE52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18090 | restriction endonuclease | |||
| 18095 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoSCU176ORF18095P |
| 18100 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoSCU176ORF18095P |
| 18105 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoSCU176ORF18095P |
| 18110 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15 | DUF3850 domain-containing protein | |||
| 20 | M | M.SflFF35ORF20P (100% identity) | M.EcoSCU176ORF20P | |
| 25 | 330 aa hypothetical protein | |||
| 565 | DUF2556 family protein | |||
| 570 | M | M.SflC32ORFAP (100% identity) | ATGCAT | M.EcoSCU176ORF570P |
| 575 | DNA-binding transcriptional regulator Fis | |||
| 7695 | phosphohydrolase | |||
| 7700 | M | M.SflC32DcmP (99% identity) | CCWGG | M.EcoSCU176DcmP |
| 7705 | V | V.SflC32DcmP (74% identity) | V.EcoSCU176DcmP | |
| 7710 | drug/metabolite exporter YedA | |||
| 13495 | replication endonuclease | |||
| 13500 | M | M.SdyFF10ORF5495P (100% identity) | GATC | M.EcoSCU176ORF13500P |
| 13505 | TraR/DksA family transcriptional regulator | |||
| 18320 | McrC family protein | |||
| 18325 | R | EcosS9ORF2810P (99% identity) | GGTCTC | EcoSCU176ORF18330P |
| 18330 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoSCU176ORF18330P |
| 18335 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M2.EcoSCU176ORF18330P |
| 18340 | ATP-binding protein | |||
| 21020 | ribulose-phosphate 3-epimerase | |||
| 21025 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSCU176DamP |
| 21030 | cell division protein DamX | |||
| 22525 | transposase | |||
| 22530 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoSCU176ORF22535P |
| 22535 | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoSCU176ORF22535P |
| 22540 | transposase | |||
| plasmid pSCU-176-6 | ||||
| 24535 | 59 aa hypothetical protein | |||
| 24540 | M | M.EcoED31ORF25160P (100% identity) | CCGCGG | M.EcoSCU176ORF24540P |
| 24545 | R | EcoED31ORF25160P (100% identity) | CCGCGG | EcoSCU176ORF24540P |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7315 | shufflon system plasmid conjugative transfer | |||
| 7320 | R | Sensp14178ORF9290P (100% identity) | EcoSCU176ORF7325P | |
| 7325 | M | M.Sensp14178ORF9290P (100% identity) | M.EcoSCU176ORF7325P | |
| 7330 | integrase arm-type DNA-binding domain-containing | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18310 | IS3-like element ISEc52 family transposase | |||
| 18315 | R | EcosS3McrBP (100% identity) | EcoSCU176McrBP | |
| 18320 | R | EcosS9McrCP (100% identity) | EcoSCU176McrCP | |
| 18325 | Alw26I/Eco31I/Esp3I family type II restriction | |||