Escherichia coli TUM18780 |
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Putative Escherichia coli TUM18780 RM systems
Ref: Ito,Y. et al. unpublished
REBASE ref # 30310
| Sequence length: | GenBank #: | |
| Chromosome: | 4,894,769 bp | AP023197 |
| plasmid pMTY18780-1_lncHI2: | 272,842 bp | AP023198 |
| plasmid pMTY18780-3: | 112,965 bp | AP023200 |
REBASE acronym: Eco18780
Org_num: 40086
All begin TUM18780_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 27560 | 290 aa hypothetical protein | |||
| 27570 | M | M.Eco18530ORF27610P (100% identity) | CACNNNNNNTCC | M.Eco18780ORF27570P |
| 27580 | S | S.EcoNT1F31ORF7070P (68% identity) | CACNNNNNNTCC | S.Eco18780ORF27570P |
| 27590 | R | EcoW25IIP (100% identity) | CACNNNNNNTCC | Eco18780ORF27570P |
| 27600 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3640 | cell division protein DamX | |||
| 3650 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco18780DamP |
| 3660 | ribulose-phosphate 3-epimerase | |||
| 4660 | acrEF/envCD operon transcriptional regulator | |||
| 4670 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco18780ORF4670P |
| 4680 | DNA-binding protein Fis | |||
| 8580 | transcriptional regulator | |||
| 8590 | R | EcoTHO010ORF9060P (100% identity) | Eco18780ORF8590P | |
| 8600 | 536 aa hypothetical protein | |||
| 10730 | outer membrane autotransporter barrel | |||
| 10740 | R | Sens24184ORF5380P (100% identity) | C | Eco18780ORF10740P |
| 10750 | 182 aa hypothetical protein | |||
| 17140 | 107 aa hypothetical protein | |||
| 17150 | M | M.EcoR5DcmP (100% identity) | CCWGG | M.Eco18780DcmP |
| 17160 | V | V.EcoLR291DcmP (100% identity) | V.Eco18780DcmP | |
| 17170 | multidrug transporter | |||
| 34540 | LexA family transcriptional regulator | |||
| 34550 | M | M.EcoH22ORF14600P (100% identity) | GATC | M.Eco18780ORF34550P |
| 34560 | 162 aa hypothetical protein | |||
| 38640 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | |||
| ??? | R | EcoW619ORFAP (96% identity) | Eco18780ORF38660P | |
| 38670 | 100 aa hypothetical protein | |||
| plasmid pMTY18780-1_lncHI2 | ||||
| 45750 | nuclease | |||
| ??? | M | M.YpsF1ORFCP (100% identity) | M.Eco18780ORF45770P | |
| 45780 | 55 aa hypothetical protein | |||
| 47020 | 108 aa hypothetical protein | |||
| 47030 | M | M.YpsF1ORFBP (100% identity) | M.Eco18780ORF47030P | |
| 47040 | 202 aa hypothetical protein | |||
| 47370 | DNA-binding protein | |||
| 47380 | M | M.YpsF1ORFDP (84% identity) | M.Eco18780ORF47380P | |
| 47390 | 85 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 38670 | 100 aa hypothetical protein | |||
| 38680 | R | Ecos19ORF20250P (100% identity) | Eco18780ORF38690P | |
| 38690 | M | M.EcoXH990ORF24545P (100% identity) | M.Eco18780ORF38690P | |
| 38700 | DNA helicase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pMTY18780-3 | ||||
| 49800 | 76 aa hypothetical protein | |||
| 49810 | M | M.Sso524ORF460P (100% identity) | M.Eco18780ORF49810P | |
| 49820 | 269 aa hypothetical protein | |||