Escherichia coli SCU-482 |
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Putative Escherichia coli SCU-482 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,152,539 bp | CP053247 |
| plasmid pSCU-482-1: | 145,015 bp | CP053248 |
REBASE acronym: EcoSCU482
Org_num: 40076
All begin HHJ51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7540 | adenine/cytosine-specific restriction | |||
| 7545 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoSCU482ORF7550P |
| 7550 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoSCU482ORF7550P |
| 7555 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoSCU482ORF7550P |
| 7560 | endoribonuclease SymE | |||
| 20340 | L,D-transpeptidase | |||
| 20345 | M | M.Sen64034II (100% identity) | AGCNNNNNCTTC | M.EcoSCU482ORF20345P |
| 20350 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.EcoSCU482ORF20345P |
| 20355 | restriction system-associated AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 300 | NinE family protein | |||
| 305 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoSCU482ORF305P |
| 310 | recombination protein NinB | |||
| 13050 | cell division protein DamX | |||
| 13055 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoSCU482DamP |
| 13060 | ribulose-phosphate 3-epimerase | |||
| 13580 | DUF2556 family protein | |||
| 13585 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoSCU482ORF13585P |
| 13590 | DNA-binding transcriptional regulator Fis | |||
| 20590 | phosphohydrolase | |||
| 20595 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.EcoSCU482DcmP |
| 20600 | V | V.Ecostr9DcmP (74% identity) | V.EcoSCU482DcmP | |
| 20605 | drug/metabolite exporter YedA | |||
| 21130 | PerC family transcriptional regulator | |||
| 21135 | M | M.EcoSCU175ORF15175P (100% identity) | GATC | M.EcoSCU482ORF21135P |
| 21140 | RusA family crossover junction | |||
| plasmid pSCU-482-1 | ||||
| 25655 | 73 aa hypothetical protein | |||
| 25660 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.EcoSCU482ORF25660P |
| 25665 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7535 | GTPase | |||
| 7540 | R | Ssp28760MrrP (100% identity) | EcoSCU482MrrP | |
| 7545 | type I restriction-modification system | |||
| 7560 | endoribonuclease SymE | |||
| 7565 | R | SenHNK130McrBP (100% identity) | EcoSCU482McrBP | |
| 7570 | R | SenHNK130McrCP (100% identity) | EcoSCU482McrCP | |