Escherichia coli SCU-313 |
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Putative Escherichia coli SCU-313 RM systems
Ref: Stephens,C. et al. unpublished
REBASE ref # 30306
| Sequence length: | GenBank #: | |
| Chromosome: | 5,087,909 bp | CP051694 |
| plasmid pSCU-313-1: | 105,394 bp | CP051695 |
| plasmid pSCU-313-2: | 67,142 bp | CP051696 |
REBASE acronym: EcoSCU313
Org_num: 40073
All begin HHJ46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20910 | adenine/cytosine-specific restriction | |||
| 20915 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoSCU313ORF20920P |
| 20920 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoSCU313ORF20920P |
| 20925 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoSCU313ORF20920P |
| 20930 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1880 | cell division protein DamX | |||
| 1885 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoSCU313DamP |
| 1890 | ribulose-phosphate 3-epimerase | |||
| 2410 | DUF2556 family protein | |||
| 2415 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoSCU313ORF2415P |
| 2420 | DNA-binding transcriptional regulator Fis | |||
| 9720 | phosphohydrolase | |||
| 9725 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoSCU313DcmP |
| 9730 | V | V.SflC32DcmP (74% identity) | V.EcoSCU313DcmP | |
| 9735 | drug/metabolite exporter YedA | |||
| 12505 | 71 aa hypothetical protein | |||
| 12510 | M | M.KpnYN1ORFGP (89% identity) | M.EcoSCU313ORF12510P | |
| 12515 | helix-turn-helix transcriptional regulator | |||
| 13680 | DUF1737 domain-containing protein | |||
| 13700 | M | M.SsoCS14ORF10750P (100% identity) | A | M.EcoSCU313ORF13700P |
| 13705 | TrmB family transcriptional regulator | |||
| plasmid pSCU-313-1 | ||||
| 24800 | 89 aa hypothetical protein | |||
| ??? | M | M.EcoST410ORF25360P (62% identity) | M.EcoSCU313ORF24810P | |
| 24815 | 58 aa hypothetical protein | |||
| plasmid pSCU-313-2 | ||||
| 25095 | 105 aa hypothetical protein | |||
| 25100 | M | M.Sen1357ORF24335P (100% identity) | M.EcoSCU313ORF25100P | |
| 25105 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20905 | GTPase | |||
| 20910 | R | Ssp28760MrrP (100% identity) | EcoSCU313MrrP | |
| 20915 | type I restriction-modification system | |||
| 20930 | endoribonuclease SymE | |||
| 20935 | R | SenHNK130McrBP (100% identity) | EcoSCU313McrBP | |
| 20940 | R | SenHNK130McrCP (100% identity) | EcoSCU313McrCP | |