Escherichia coli IVRI Kol CP4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli IVRI Kol CP4 RM systems
Ref: Bandyopadhyay,S. et al. unpublished
REBASE ref # 30298
| Sequence length: | GenBank #: | |
| Chromosome: | 4,690,918 bp | CP034253 |
| plasmid p1ESCUMpO83_CORR: | 92,840 bp | CP034254 |
REBASE acronym: EcoKolCP4
Org_num: 40001
All begin EAE13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 13145 | IS1 family transposase | |||
| 13150 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoKolCP4ORF13160P |
| 13155 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoKolCP4ORF13160P |
| 13160 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoKolCP4ORF13160P |
| 13165 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9255 | protein DamX | |||
| 9260 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoKolCP4DamP |
| 9265 | ribulose-phosphate 3-epimerase | |||
| 9895 | DUF2556 domain-containing protein | |||
| 9900 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoKolCP4ORF9900P |
| 9905 | Fis family transcriptional regulator | |||
| 13185 | DUF4102 domain-containing protein | |||
| 13190 | M | M.Ecoi64ORF2425P (100% identity) | M.EcoKolCP4ORF13190P | |
| 13195 | AAA family ATPase | |||
| 16660 | phosphohydrolase | |||
| 16665 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.EcoKolCP4DcmP |
| 16670 | V | V.EcosEC7DcmP (100% identity) | V.EcoKolCP4DcmP | |
| 16675 | drug/metabolite exporter YedA | |||
| plasmid p1ESCUMpO83_CORR | ||||
| 23390 | 59 aa hypothetical protein | |||
| 23395 | M | M.SenST46ORF25580P (100% identity) | M.EcoKolCP4ORF23395P | |
| 23400 | 73 aa hypothetical protein | |||
| 23890 | 59 aa hypothetical protein | |||
| 23895 | M | M.SenST46ORF25580P (100% identity) | M.EcoKolCP4ORF23895P | |
| 23900 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16495 | shufflon system plasmid conjugative transfer | |||
| 16500 | R | Sensp14178ORF9290P (100% identity) | EcoKolCP4ORF16505P | |
| 16505 | M | M.Sensp14178ORF9290P (100% identity) | M.EcoKolCP4ORF16505P | |
| 16510 | DUF4102 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20660 | isocitrate dehydrogenase | |||
| 20665 | R | EcosEC27McrCP (100% identity) | EcoKolCP4McrCP | |
| 20670 | R | EcoteDMcrBP (100% identity) | EcoKolCP4McrBP | |
| 20675 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22375 | replication endonuclease | |||
| 22380 | M | M.Sen663ORF16605P (100% identity) | GATC | M.EcoKolCP4ORF22380P |
| 22385 | TraR/DksA family transcriptional regulator | |||