Escherichia coli NCTC9963 |
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Putative Escherichia coli NCTC9963 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,545,906 bp
GenBank #: UGDS00000000 (NZ_UGDS00000000)
REBASE acronym: EcoC9963
Org_num: 43870
All begin NCTC9963_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4530 | S | S.Eco9024II (91% identity) | GCANNNNNNNNTATC | S.EcoC9963I |
| 4531 | M | M.Eco9024II (92% identity) | GCANNNNNNNNTATC | M.EcoC9963I |
| 4532 | type I restriction enzyme StySJI M protein | |||
| 4533 | R | Eco9024IIP (100% identity) | GCANNNNNNNNTATC | EcoC9963IP |
| 4534 | methylated adenine and cytosine restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5464 | cytoplasmic protein | |||
| 5465 | M | M.Eco3234AORF210P (99% identity) | M.EcoC9963ORF5465P | |
| 5466 | plasmid segregation protein | |||
| 422 | DamX protein | |||
| 423 | M | M.EcoSCU316DamP (100% identity) | GATC | M.EcoC9963Dam |
| 424 | ribulose-phosphate 3-epimerase | |||
| 528 | membrane protein | |||
| 529 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.EcoC9963ORF529P |
| 530 | DNA-binding protein Fis | |||
| 2101 | phosphohydrolase | |||
| 2102 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoC9963DcmP |
| 2103 | V | V.Ecostr9DcmP (74% identity) | V.EcoC9963DcmP | |
| 2104 | DMT superfamily transporter inner | |||
| 3755 | Lysis protein S | |||
| 3757 | M | M.EcoECO21ORF16295P (100% identity) | M.EcoC9963ORF3757P | |
| 3758 | lipoprotein | |||
| 4573 | acetoacetate metabolism regulator (two-component | |||
| 4574 | R | Eco9024ORF5094P (100% identity) | EcoC9963ORF4574P | |
| 4575 | transposase Orf1 of IS3 family IS element | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 74 | DNA-directed RNA polymerase, beta subunit/140 kD | |||
| 75 | R | Kpn0718McrBP (100% identity) | EcoC9963McrBP | |
| 76 | R | SflN97McrCP (100% identity) | EcoC9963McrCP | |
| 78 | csc operon repressor | |||
| 4533 | type I restriction enzyme EcoKI subunit R | |||
| 4534 | R | Ssp28760MrrP (100% identity) | EcoC9963MrrP | |
| 4535 | GTP-binding protein YjiA | |||