Escherichia coli NCTC9056 |
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Putative Escherichia coli NCTC9056 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,231,709 bp
GenBank #: UFYL00000000 (NZ_UFYL00000000)
REBASE acronym: Eco9056
Org_num: 43816
All begin NCTC9056_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3642 | ATP-binding protein | |||
| 3643 | S | S.EcoF6326I (100% identity) | CAAYNNNNNCTGC | S.Eco9056I |
| 3644 | M | M.SflN116ORF3940P (100% identity) | CAAYNNNNNCTGC | M.Eco9056I |
| 3645 | R | EcoSC3IIP (100% identity) | CAAYNNNNNCTGC | Eco9056IP |
| 3646 | phage regulatory protein | |||
| 4404 | 5-methylcytosine-specific restriction enzyme | |||
| 4406 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco9056II |
| 4407 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco9056II |
| 4408 | R | Eco10863IP (99% identity) | AACNNNNNNGTGC | Eco9056IIP |
| 4409 | methylated adenine and cytosine restriction | |||
| 4860 | Uncharacterised protein | |||
| 4861 | M | M.Eco62AORF21615P (100% identity) | M.Eco9056ORF4861P | |
| 4862 | S | S.Eco62AORF21615P (33% identity) | S1.Eco9056ORF4861P | |
| 4863 | S | S.Eco62AORF21615P (61% identity) | S2.Eco9056ORF4861P | |
| 4864 | Uncharacterised protein | |||
| 4865 | R | Eco10959IIP (99% identity) | Eco9056ORF4861P | |
| 4866 | phage integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 154 | cytoplasmic protein | |||
| 155 | M | M.EcopO26ORF90P (100% identity) | M.Eco9056ORF155P | |
| 156 | YfdA | |||
| 1758 | DMT superfamily transporter inner | |||
| 1759 | V | V.SflSTLE3DcmP (100% identity) | V.Eco9056DcmP | |
| 1760 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco9056DcmP |
| 1761 | phosphohydrolase | |||
| 3217 | DNA-binding protein Fis | |||
| 3218 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco9056ORF3218P |
| 3219 | membrane protein | |||
| 3344 | ribulose-phosphate 3-epimerase | |||
| 3345 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco9056DamP |
| 3346 | DamX protein | |||
| 4454 | CPS-53 (KpLE1) prophage protein | |||
| 4455 | M | M.EcoW004ORF19230P (100% identity) | GATC | M.Eco9056ORF4455P |
| 4456 | LexA repressor | |||
| 4465 | Uncharacterised protein | |||
| 4466 | M | M.Sso63633ORF22290P (100% identity) | M.Eco9056ORF4466P | |
| 4467 | phage lysis protein | |||
| 5162 | lipoprotein | |||
| 5163 | M | M.EcoZ247ORF23540P (75% identity) | M.Eco9056ORF5163P | |
| 5164 | IS1 transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4402 | DEAD-box helicase-like protein | |||
| 4403 | R | SenHNK130McrCP (100% identity) | Eco9056McrCP | |
| ??? | R | Eco10863McrBP (100% identity) | Eco9056McrBP | |
| 4406 | EcoKI restriction-modification system protein | |||
| 4408 | type I restriction enzyme EcoKI subunit R | |||
| 4409 | R | SenHNK130MrrP (100% identity) | Eco9056MrrP | |
| 4410 | GTP-binding protein YjiA | |||