Escherichia coli NCTC9024 |
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Putative Escherichia coli NCTC9024 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,411,451 bp
GenBank #: UGAJ00000000 (NZ_UGAJ00000000)
REBASE acronym: Eco9024
Org_num: 43797
All begin NCTC9024_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3307 | Uncharacterised protein | |||
| 3308 | S | S.EcoECB1ORF9045P (100% identity) | TGANNNNNNCTTT | S.Eco9024I |
| 3309 | M | M.EcoDEC2DORF4922P (100% identity) | TGANNNNNNCTTT | M.Eco9024I |
| ??? | R | EcoC0331ORF7685P (99% identity) | TGANNNNNNCTTT | Eco9024IP |
| 3312 | transposase | |||
| 5224 | DEAD-box helicase-like protein | |||
| ??? | S | S.EcoC9963I (91% identity) | GCANNNNNNNNTATC | S.Eco9024II |
| 5229 | M | M.SflFF12ORF17265P (99% identity) | GCANNNNNNNNTATC | M.Eco9024II |
| 5230 | R | EcoC9963IP (100% identity) | GCANNNNNNNNTATC | Eco9024IIP |
| 5231 | methylated adenine and cytosine restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1227 | cytoplasmic protein | |||
| ??? | M | M.SflN92ORF24820P (100% identity) | M.Eco9024ORF1228P | |
| 1230 | YfdA | |||
| 570 | phosphohydrolase | |||
| 571 | M | M.EcosPA11DcmP (100% identity) | CCWGG | M.Eco9024DcmP |
| 572 | V | V.Ecostr9DcmP (74% identity) | V.Eco9024DcmP | |
| 573 | DMT superfamily transporter inner | |||
| 3737 | DNA-binding protein Fis | |||
| 3738 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.Eco9024ORF3738P |
| 3739 | membrane protein | |||
| 3852 | ribulose-phosphate 3-epimerase | |||
| 3853 | M | M.EcoSCU316DamP (100% identity) | GATC | M.Eco9024Dam |
| 3854 | DamX protein | |||
| 4601 | Uncharacterised protein | |||
| ??? | M | M.EcoZ247ORF16670P (98% identity) | M.Eco9024ORF4602P | |
| 4603 | R | EcoPM22ORF25P (99% identity) | Eco9024ORF4602P | |
| 4604 | IS1414, transposase | |||
| 5093 | transposase Orf1 of IS3 family IS element | |||
| 5094 | R | EcoC9963ORF4574P (100% identity) | Eco9024ORF5094P | |
| 5095 | acetoacetate metabolism regulator (two-component | |||
| 5969 | lipoprotein | |||
| 5970 | M | M.EcoECO21ORF16295P (100% identity) | M.Eco9024ORF5970P | |
| 5972 | Lysis protein S | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5230 | type I restriction enzyme EcoKI subunit R | |||
| 5231 | R | Ssp28760MrrP (100% identity) | Eco9024MrrP | |
| 5232 | GTP-binding protein YjiA | |||