Escherichia coli NCTC9010 |
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Putative Escherichia coli NCTC9010 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,480,974 bp
GenBank #: UGDF00000000 (NZ_UGDF00000000)
REBASE acronym: Eco9010
Org_num: 43786
All begin NCTC9010_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4437 | methylated adenine and cytosine restriction | |||
| 4438 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco9010IP |
| 4439 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco9010I |
| ??? | S | S.EcoU90ORF3805P (100% identity) | TGANNNNNNNNTGCT | S.Eco9010I |
| 4442 | 5-methylcytosine-specific restriction enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5415 | TciA/TerB-like protein | |||
| 5419 | M | M.Eco23506ORF5660P (100% identity) | M.Eco9010ORF5419P | |
| 5420 | recombination associated protein | |||
| 5309 | cytoplasmic protein | |||
| 5310 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco9010ORF5310P |
| 5311 | YfdA | |||
| 411 | DamX protein | |||
| 412 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco9010DamP |
| 413 | ribulose-phosphate 3-epimerase | |||
| 538 | membrane protein | |||
| 539 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco9010ORF539P |
| 540 | DNA-binding protein Fis | |||
| 2128 | phosphohydrolase | |||
| 2129 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.Eco9010DcmP |
| 2130 | V | V.SsoSE61DcmP (100% identity) | V.Eco9010DcmP | |
| 2131 | DMT superfamily transporter inner | |||
| 2538 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco9010ORF2539P | |
| 2541 | membrane protein | |||
| 3536 | protein ninx | |||
| 3537 | M | M.EcoR11ORF20620P (100% identity) | GATC | M.Eco9010ORF3537P |
| 3538 | recombination protein ninB from phage origin | |||
| 4100 | PglZ domain | |||
| 4101 | RM | EcoR11ORF24170P (100% identity) | GGTAAG | Eco9010II |
| 4102 | ATPase-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4436 | GTP-binding protein YjiA | |||
| 4437 | R | Ssp28760MrrP (100% identity) | Eco9010MrrP | |
| 4438 | type I restriction enzyme EcoKI subunit R | |||
| 4440 | specificity determinant for hsdM and hsdR | |||
| ??? | R | EcoR11McrBP (100% identity) | Eco9010McrBP | |
| 4444 | R | Ssp28760McrCP (100% identity) | Eco9010McrCP | |