Escherichia coli NCTC8450 |
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Putative Escherichia coli NCTC8450 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,266,289 bp
GenBank #: UFZN00000000 (NZ_UFZN00000000)
REBASE acronym: Eco8450
Org_num: 43768
All begin NCTC8450_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 796 | Uncharacterised protein | |||
| ??? | R | EcoSCU103ORF3030P (94% identity) | RTCANNNNNNNCTC | Eco8450IP |
| 799 | S | S.EcoSCU103ORF3030P (13% identity) | RTCANNNNNNNCTC | S2.Eco8450I |
| 800 | S | S.EcoR49ORF15490P (78% identity) | RTCANNNNNNNCTC | S1.Eco8450I |
| ??? | M | M.EcoSCU103ORF3030P (100% identity) | RTCANNNNNNNCTC | M.Eco8450I |
| 803 | restriction methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4432 | YfdA | |||
| 4433 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco8450ORF4433P |
| 4434 | cytoplasmic protein | |||
| 4869 | DamX protein | |||
| 4870 | M | M.Sdy59952DamP (100% identity) | GATC | M.Eco8450DamP |
| 4871 | ribulose-phosphate 3-epimerase | |||
| 4980 | membrane protein | |||
| ??? | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.Eco8450ORF4981P |
| 4982 | DNA-binding protein Fis | |||
| 709 | oxidoreductase | |||
| 711 | M | M.Eho76201ORFBP (97% identity) | CCGCGG | M.Eco8450ORF711P |
| 712 | R | EcoSCU172ORF2910P (100% identity) | CCGCGG | Eco8450ORF711P |
| 713 | site-specific recombinases | |||
| 806 | McrC family protein, McrBC 5-methylcytosine | |||
| 807 | R | EcoSCU103ORF3050P (100% identity) | Eco8450ORF807P | |
| 808 | YjhS protein | |||
| 2056 | Replication gene A protein (GpA) | |||
| 2057 | M | M.EcoCase5ORF15P (100% identity) | M.Eco8450ORF2057P | |
| 2058 | Uncharacterised protein | |||
| 2059 | R | EcoCase5ORF15P (100% identity) | Eco8450ORF2057P | |
| 2060 | bacteriophage capsid portal protein | |||
| 2212 | recombination protein ninB from phage origin | |||
| 2213 | M | M.EcosC25ORF16305P (99% identity) | GATC | M.Eco8450ORF2213P |
| 2214 | endonuclease | |||
| 2320 | phosphohydrolase | |||
| 2321 | M | M.EcosS9DcmP (99% identity) | CCWGG | M.Eco8450DcmP |
| 2322 | V | V.SflC32DcmP (74% identity) | V.Eco8450DcmP | |
| 2323 | DMT superfamily transporter inner | |||
| 2852 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco8450ORF2853P | |
| 2854 | membrane protein | |||
| 3209 | phage protein | |||
| 3215 | M | M.EcoO18ORF1645P (46% identity) | M1.Eco8450ORF3215P | |
| 3216 | M | M.SsoL4094ORF17545P (46% identity) | M2.Eco8450ORF3215P | |
| 3217 | lipoprotein | |||
| 4252 | transcriptional activator from phage | |||
| 4253 | M | M.Eco4CORF7645P (100% identity) | M.Eco8450ORF4253P | |
| 4254 | phage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 804 | McrB family protein, GTPase subunit of | |||
| 805 | R | SflSTLE4McrBP (59% identity) | Eco8450McrBP | |
| 806 | R | SflSTLE4McrCP (100% identity) | Eco8450McrCP | |
| 807 | restriction endonuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3406 | protein ninx | |||
| 3407 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco8450ORF3407P |
| 3408 | recombination protein ninB from phage origin | |||