Escherichia coli NCTC13125 |
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Putative Escherichia coli NCTC13125 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,838,981 bp
GenBank #: UGCN00000000 (NZ_UGCN00000000)
REBASE acronym: Eco13125
Org_num: 43732
All begin NCTC13125_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2442 | Uncharacterized conserved protein | |||
| 2443 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco13125IP |
| 2444 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco13125I |
| 2445 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco13125I |
| 2447 | Uncharacterized conserved protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 449 | YfdA | |||
| 450 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco13125ORF450P | |
| 451 | cytoplasmic protein | |||
| 329 | cytoplasmic protein | |||
| 330 | M | M.SenS380ORF24445P (100% identity) | M.Eco13125ORF330P | |
| 331 | YfdA | |||
| 2498 | helicase superfamily protein | |||
| ??? | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco13125II |
| 2501 | helicase domain-containing protein | |||
| 2507 | N-acetylneuraminate epimerase 2 | |||
| 2508 | R | Ecos1613ORF26795P (100% identity) | Eco13125ORF2508P | |
| 2509 | integrase | |||
| 3663 | DamX protein | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco13125DamP |
| 3665 | ribulose-phosphate 3-epimerase | |||
| 3781 | membrane protein | |||
| 3782 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco13125ORF3782P |
| 3783 | DNA-binding protein Fis | |||
| 4836 | Protein of uncharacterised function (DUF1627) | |||
| 4837 | M | M.Eco95NR1ORF3839P (99% identity) | M.Eco13125ORF4837P | |
| 4839 | antirepressor protein | |||
| 5659 | YjhS | |||
| 5663 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco13125ORF5663P | |
| 5664 | lipoprotein | |||
| 6141 | DMT superfamily transporter inner | |||
| 6142 | V | V.EcosPA8DcmP (100% identity) | V.Eco13125DcmP | |
| 6143 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco13125DcmP |
| 6144 | phosphohydrolase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2445 | type I restriction-modification system subunit | |||
| 2447 | R | EcosPA8GmrSDP (55% identity) | Eco13125GmrDP | |
| 2448 | R | Ecos1613GmrSP (100% identity) | Eco13125GmrSP | |
| 2449 | protein YjiS | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4869 | prophage protein ninB | |||
| 4870 | M | M.SflN97ORF8425P (100% identity) | GATC | M.Eco13125ORF4870P |
| 4871 | Uncharacterised protein | |||