Escherichia coli NCTC11475 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli NCTC11475 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,230,053 bp
GenBank #: UGCK00000000 (NZ_UGCK00000000)
REBASE acronym: Eco11475
Org_num: 43721
All begin NCTC11475_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4481 | methylated adenine and cytosine restriction | |||
| 4482 | R | Ecos15955ORF12100P (96% identity) | RTCANNNNNNNCTTC | Eco11475IP |
| 4483 | M | M.Ecos15955ORF12100P (98% identity) | RTCANNNNNNNCTTC | M.Eco11475I |
| 4484 | S | S.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | S.Eco11475I |
| 4486 | DEAD-box helicase-like protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 379 | DamX protein | |||
| 380 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco11475DamP |
| 381 | ribulose-phosphate 3-epimerase | |||
| 512 | membrane protein | |||
| 513 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.Eco11475ORF513P |
| 514 | DNA-binding protein Fis | |||
| 1328 | phage protein | |||
| 1329 | M | M.Sdy9753ORFBP (100% identity) | M.Eco11475ORF1329P | |
| 1330 | transcriptional activator from phage | |||
| 2016 | phosphohydrolase | |||
| ??? | M | M.EcoC9098DcmP (100% identity) | CCWGG | M.Eco11475DcmP |
| 2020 | V | V.SflFF59DcmP (100% identity) | V.Eco11475DcmP | |
| 2021 | DMT superfamily transporter inner | |||
| 2936 | phage protein | |||
| 2942 | M | M.SsoL4094ORF17545P (99% identity) | A | M.Eco11475ORF2942P |
| 2943 | lipoprotein | |||
| 3313 | TciA/TerB-like protein | |||
| 3317 | M | M.EcoST05ORF11640P (100% identity) | M.Eco11475ORF3317P | |
| 3318 | lipoprotein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3090 | isocitrate dehydrogenase | |||
| 3091 | R | Ecos15955McrCP (100% identity) | Eco11475McrCP | |
| 3092 | R | Ecos15955McrBP (99% identity) | Eco11475McrBP | |
| 3094 | transposase | |||
| 4480 | GTP-binding protein YjiA | |||
| 4481 | R | Ssp28760MrrP (100% identity) | Eco11475MrrP | |
| 4482 | type I restriction enzyme EcoKI subunit R | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1774 | CPS-53 (KpLE1) prophage protein | |||
| 1775 | M | M.EcoG8ORF8555P (100% identity) | GATC | M.Eco11475ORF1775P |
| 1776 | LexA repressor | |||
| 3435 | Uncharacterised protein | |||
| 3436 | M | M.EcoS792ORF20065P (100% identity) | M.Eco11475ORF3436P | |
| 3437 | Uncharacterised protein | |||
| 4610 | Uncharacterised protein | |||
| 4611 | M | M.EcoS792ORF20065P (99% identity) | M.Eco11475ORF4611P | |
| 4612 | Uncharacterised protein | |||