Escherichia coli NCTC11130 |
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Putative Escherichia coli NCTC11130 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,202,335 bp
GenBank #: UGCH00000000 (NZ_UGCH00000000)
REBASE acronym: Eco11130
Org_num: 43712
All begin NCTC11130_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5043 | morphogenetic protein | |||
| 5044 | R | Eco11129IP (100% identity) | GAANNNNNNNTAAA | Eco11130IP |
| 5045 | S | S.Eco7727ORF4952P (100% identity) | GAANNNNNNNTAAA | S.Eco11130I |
| 5046 | M | M.Eco7727ORF4952P (100% identity) | GAANNNNNNNTAAA | M.Eco11130I |
| 5047 | antitoxin of P1 addiction system | |||
| 999 | methylated adenine and cytosine restriction | |||
| 1000 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | Eco11130IIP |
| 1001 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.Eco11130II |
| ??? | S | S.EcoU90ORF3805P (100% identity) | TGANNNNNNNNTGCT | S.Eco11130II |
| 1004 | 5-methylcytosine-specific restriction enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 49 | replication protein for prophage | |||
| 50 | M | M.EcoZ01ORF1668P (100% identity) | GATC | M.Eco11130ORF50P |
| 51 | TraR/DksA family transcriptional regulator | |||
| 2233 | DamX protein | |||
| 2234 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco11130DamP |
| 2235 | ribulose-phosphate 3-epimerase | |||
| 2362 | membrane protein | |||
| 2363 | M | M.Ssp28760ORF20045P (99% identity) | ATGCAT | M.Eco11130ORF2363P |
| 2364 | DNA-binding protein Fis | |||
| 3769 | phosphohydrolase | |||
| 3770 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco11130DcmP |
| 3771 | V | V.SsoSE61DcmP (100% identity) | V.Eco11130DcmP | |
| 3772 | DMT superfamily transporter inner | |||
| 4177 | prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco11130ORF4178P | |
| 4179 | membrane protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 998 | GTP-binding protein YjiA | |||
| 999 | R | Ssp28760MrrP (100% identity) | Eco11130MrrP | |
| 1000 | type I restriction enzyme EcoKI subunit R | |||
| 1002 | specificity determinant for hsdM and hsdR | |||
| ??? | R | Ssp28760McrBP (100% identity) | Eco11130McrBP | |
| 1005 | R | Ssp28760McrCP (100% identity) | Eco11130McrCP | |