Escherichia coli NCTC10863 |
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Putative Escherichia coli NCTC10863 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,460,806 bp
GenBank #: UGEW00000000 (NZ_UGEW00000000)
REBASE acronym: Eco10863
Org_num: 43678
All begin NCTC10863_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3400 | type I restriction-modification enzyme, M | |||
| 3401 | S | S.EcoRG044ORF15335P (27% identity) | GAGNNNNNGTTY | S1.Eco10863II |
| 3402 | S | S.EcoR5ORF24250P (64% identity) | GAGNNNNNGTTY | S2.Eco10863IIP |
| 3403 | Uncharacterised protein | |||
| 3404 | RNase III inhibitor | |||
| 3405 | R | PmeBin330ORFCP (100% identity) | GAGNNNNNGTTY | Eco10863IIP |
| 3406 | hydrolase | |||
| 4704 | methylated adenine and cytosine restriction | |||
| 4705 | R | Eco9056IIP (99% identity) | AACNNNNNNGTGC | Eco10863IP |
| 4706 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco10863I |
| 4707 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.Eco10863I |
| 4709 | 5-methylcytosine-specific restriction enzyme | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 525 | DamX protein | |||
| 526 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco10863DamP |
| 527 | ribulose-phosphate 3-epimerase | |||
| 650 | membrane protein | |||
| 651 | M | M.SflC32ORFAP (100% identity) | ATGCAT | M.Eco10863ORF651P |
| 652 | DNA-binding protein Fis | |||
| 1560 | tail sheath protein | |||
| 1561 | M | M.EcoC84497ORFAP (99% identity) | M.Eco10863ORF1561P | |
| 1562 | Uncharacterised protein | |||
| 2338 | phosphohydrolase | |||
| ??? | M | M.Eco9075DcmP (99% identity) | CCWGG | M.Eco10863DcmP |
| 2341 | V | V.SflC32DcmP (74% identity) | V.Eco10863DcmP | |
| 2342 | DMT superfamily transporter inner | |||
| 3080 | phage protein YjhS encoded within prophage | |||
| 3086 | M | M.SsoL4094ORF17545P (100% identity) | A | M.Eco10863ORF3086P |
| 3087 | lipoprotein | |||
| 3768 | protein ninx | |||
| 3769 | M | M.SflN97ORF15810P (99% identity) | GATC | M.Eco10863ORF3769P |
| 3770 | recombination protein ninB from phage origin | |||
| 4286 | PglZ domain | |||
| 4287 | RM | EcoHSI (100% identity) | GGTAAG | Eco10863IV |
| 4288 | ATPase-like protein | |||
| 4295 | Uncharacterised protein | |||
| 4296 | M | M.KpnFF77ORF20840P (100% identity) | GGTACC | M.Eco10863III |
| 4297 | site-specific recombinase, phage integrase | |||
| 4658 | LexA repressor | |||
| 4659 | M | M.EcosA33ORF3820P (100% identity) | GATC | M.Eco10863ORF4659P |
| 4660 | CPS-53 (KpLE1) prophage protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4703 | GTP-binding protein YjiA | |||
| 4704 | R | SenHNK130MrrP (100% identity) | Eco10863MrrP | |
| 4705 | type I restriction enzyme EcoKI subunit R | |||
| 4707 | EcoKI restriction-modification system protein | |||
| ??? | R | Eco9056McrBP (100% identity) | Eco10863McrBP | |
| 4710 | R | SenHNK130McrCP (100% identity) | Eco10863McrCP | |