Escherichia coli NCTC10086 |
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Putative Escherichia coli NCTC10086 RM systems
Ref: Doyle,S. unpublished
REBASE ref # 22501
Contig set: 5,137,378 bp
GenBank #: UGEY00000000 (NZ_UGEY00000000)
REBASE acronym: Eco10086
Org_num: 43659
All begin NCTC10086_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 698 | IS3 element transposase | |||
| 699 | M | M.Eco4075ORF3360P (100% identity) | ACTNNNNNNRTCG | M.Eco10086III |
| 700 | S | S.EcoB8S56ORF27280P (100% identity) | ACTNNNNNNRTCG | S.Eco10086III |
| 701 | Uncharacterised protein | |||
| 702 | R | Eco4075ORF3360P (100% identity) | ACTNNNNNNRTCG | Eco10086IIIP |
| 703 | CP4-6 prophage; partial regulator of insertion | |||
| 1257 | IS1 transposase | |||
| 1258 | R | Sen12509ORF5865P (100% identity) | Eco10086ORF1262P | |
| 1259 | S | S.Sen12509ORF5865P (91% identity) | S.Eco10086ORF1262P | |
| 1260 | IS1 transposase | |||
| 1261 | IS1 protein InsB | |||
| 1262 | M | M.SenS688ORF13495P (100% identity) | M.Eco10086ORF1262P | |
| 1263 | ybl116 | |||
| 3948 | Protein of unknwon function (DUF2893) | |||
| 3949 | R | EcoP1525ORF5305P (100% identity) | CAACNNNNGTT | Eco10086IP |
| 3950 | M | M.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | M.Eco10086I |
| 3951 | S | S.EcoW1316ORF21120P (100% identity) | CAACNNNNGTT | S.Eco10086I |
| 3954 | Uncharacterised protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 370 | DamX protein | |||
| 371 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco10086DamP |
| 372 | ribulose-phosphate 3-epimerase | |||
| 481 | membrane protein | |||
| 482 | M | M.EcoW1316ORF13330P (100% identity) | ATGCAT | M.Eco10086ORF482P |
| 483 | DNA-binding protein Fis | |||
| 1394 | phage protein | |||
| 1395 | M | M.EcoWP4ORF12630P (97% identity) | M.Eco10086ORF1395P | |
| 1396 | transcriptional activator from phage | |||
| 2037 | phosphohydrolase | |||
| 2038 | M | M.EcoW1316DcmP (100% identity) | CCWGG | M.Eco10086DcmP |
| 2039 | V | V.EcoW1316DcmP (100% identity) | V.Eco10086DcmP | |
| 2040 | DMT superfamily transporter inner | |||
| 2470 | Qin prophage protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Eco10086ORF2471P | |
| 2472 | membrane protein | |||
| 2846 | Shiga toxin 2 subunit A | |||
| 2849 | M | M.EcoW1316ORF2195P (100% identity) | M.Eco10086ORF2849P | |
| 2850 | lipoprotein | |||
| 3182 | Uncharacterised protein | |||
| 3183 | M | M.EcoW26ORF35400P (100% identity) | M.Eco10086ORF3183P | |
| 3184 | lipoprotein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4528 | serine protease | |||
| 4529 | M | M.Kpn0718ORF815P (95% identity) | ACCACC | M.Eco10086II |
| 4530 | R | Kpn0718ORF815P (100% identity) | ACCACC | Eco10086IIP |
| 4531 | Uncharacterised protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4538 | transposase (partial) | |||
| 4539 | R | SflN97McrCP (100% identity) | Eco10086McrCP | |
| 4540 | R | Kpn0718McrBP (100% identity) | Eco10086McrBP | |
| 4541 | DNA-directed RNA polymerase, beta subunit/140 kD | |||