Escherichia coli 2017-02-2CC |
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Putative Escherichia coli 2017-02-2CC RM systems
Ref: Yamamoto,Y. et al. mSphere (2020) In press
REBASE ref # 37785
| Sequence length: | GenBank #: | |
| Chromosome: | 4,992,219 bp | AP027764 |
| plasmid p2017-02-2CC_1: | 99,974 bp | AP027765 |
REBASE acronym: Eco22CC
Org_num: 72587
All begin VEE76_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17730 | L,D-transpeptidase | |||
| 17740 | M | M.Sen64034II (100% identity) | AGCNNNNNCTTC | M.Eco22CCORF17740P |
| 17750 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.Eco22CCORF17740P |
| 17760 | ABC transporter | |||
| 39240 | 102 aa hypothetical protein | |||
| 39250 | R | EfeEF31ORF18020P (99% identity) | Eco22CCORF39260P | |
| 39260 | M | M.SspS13ORF3945P (99% identity) | M.Eco22CCORF39260P | |
| 39270 | S | S.CfrA41ORFLP (85% identity) | S.Eco22CCORF39260P | |
| 39280 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3810 | cell division protein DamX | |||
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco22CCDamP |
| 3830 | ribulose-phosphate 3-epimerase | |||
| 4930 | acrEF/envCD operon transcriptional regulator | |||
| 4940 | M | M.EspP079ORF3959P (99% identity) | ATGCAT | M.Eco22CCORF4940P |
| 4950 | DNA-binding protein Fis | |||
| 11240 | 79 aa hypothetical protein | |||
| 11250 | M | M.SenRM006ORF5335P (100% identity) | M.Eco22CCORF11250P | |
| 11260 | 577 aa hypothetical protein | |||
| 11440 | 67 aa hypothetical protein | |||
| 11450 | M | M.Sso63633ORF22290P (99% identity) | M.Eco22CCORF11450P | |
| 11460 | Lysis protein S homolog from lambdoid prophage | |||
| 38790 | LexA family transcriptional regulator | |||
| 38800 | M | M.Eco043ORF2133P (97% identity) | GATC | M.Eco22CCORF38800P |
| 38810 | 57 aa hypothetical protein | |||
| plasmid p2017-02-2CC_1 | ||||
| 46120 | 73 aa hypothetical protein | |||
| ??? | M | M.EcoSTEC866ORF23290P (89% identity) | M.Eco22CCORF46130P | |
| 46150 | 308 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39280 | endoribonuclease SymE | |||
| 39290 | R | Efe9LTGmrSDP (99% identity) | Eco22CCGmrSDP | |
| 39300 | DUF1127 domain-containing protein | |||