Escherichia coli STEC388 |
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Putative Escherichia coli STEC388 RM systems
Ref: Yang,X. et al. Int. J. Med. Microbiol. 310 (1), 151377 (2020)
REBASE ref # 29793
| Sequence length: | GenBank #: | |
| Chromosome: | 4,928,812 bp | CP041425 |
| plasmid pSTEC388_1: | 114,158 bp | CP041426 |
| plasmid pSTEC388_2: | 67,518 bp | CP041427 |
| plasmid pSTEC388_3: | 67,626 bp | CP041428 |
REBASE acronym: EcoC388
Org_num: 38090
All begin FNE85_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21230 | 128 aa hypothetical protein | |||
| 21235 | M | M.SflFF71ORF17365P (99% identity) | M.EcoC388ORF21235P | |
| 21240 | S | S.EcoSC480ORFBP (42% identity) | S1.EcoC388ORF21235P | |
| 21245 | S | S.SflN101ORF11895P (16% identity) | S2.EcoC388ORF21235P | |
| 21250 | 428 aa hypothetical protein | |||
| plasmid pSTEC388_1 | ||||
| 25045 | IS3 family transposase | |||
| 25050 | R | Efe41C20ORF22770P (100% identity) | EcoC388ORF25065P | |
| 25055 | DUF4268 domain-containing protein | |||
| 25060 | S | S.Efe41C20ORF22770P (67% identity) | S.EcoC388ORF25065P | |
| 25065 | M | M.Eco5630ORF26280P (99% identity) | M.EcoC388ORF25065P | |
| 25070 | SPFH/Band 7/PHB domain protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1810 | cell division protein DamX | |||
| 1815 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoC388DamP |
| 1820 | ribulose-phosphate 3-epimerase | |||
| 2390 | DUF2556 domain-containing protein | |||
| 2395 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoC388ORF2395P |
| 2400 | DNA-binding transcriptional regulator Fis | |||
| 9455 | phosphohydrolase | |||
| 9460 | M | M.EcoA34DcmP (100% identity) | CCWGG | M.EcoC388DcmP |
| 9465 | V | V.EcoSFE8DcmP (100% identity) | V.EcoC388DcmP | |
| 9470 | drug/metabolite exporter YedA | |||
| 10440 | TrmB family transcriptional regulator | |||
| 10445 | M | M.EcoS6995ORFAP (99% identity) | M.EcoC388ORF10445P | |
| 10465 | anti-adapter protein IraM | |||
| 14500 | LexA family transcriptional regulator | |||
| 14505 | M | M.EcoC9108ORF3504P (100% identity) | GATC | M.EcoC388ORF14505P |
| 14510 | PerC family transcriptional regulator | |||
| 14580 | tyrosine-type recombinase/integrase | |||
| 14585 | M | M.EcoL65ORF1595P (100% identity) | M.EcoC388ORF14585P | |
| 14590 | ATP-binding protein | |||
| 21210 | HNH endonuclease | |||
| 21215 | R | SflFF17ORF19275P (100% identity) | EcoC388ORF21215P | |
| 21220 | restriction endonuclease | |||
| plasmid pSTEC388_2 | ||||
| 25350 | 73 aa hypothetical protein | |||
| 25355 | M | M.Ecocq9ORF29050P (99% identity) | M.EcoC388ORF25355P | |
| 25360 | group II intron reverse transcriptase/maturase | |||
| plasmid pSTEC388_3 | ||||
| 26165 | 97 aa hypothetical protein | |||
| 26170 | M | M.Sfl2142ORF380P (100% identity) | M.EcoC388ORF26170P | |
| 26175 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21215 | HNH endonuclease | |||
| 21220 | R | Ecows53McrBP (100% identity) | EcoC388McrBP | |
| 21225 | R | Ecows53McrCP (99% identity) | EcoC388McrCP | |
| 21230 | 128 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pSTEC388_1 | ||||
| 24930 | 76 aa hypothetical protein | |||
| 24935 | M | M.Ecoppa6ORF24465P (100% identity) | M.EcoC388ORF24935P | |
| 24940 | 269 aa hypothetical protein | |||