Escherichia coli STEC316 |
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Putative Escherichia coli STEC316 RM systems
Ref: Yang,X. et al. Int. J. Med. Microbiol. 310 (1), 151377 (2020)
REBASE ref # 29793
| Sequence length: | GenBank #: | |
| Chromosome: | 5,246,433 bp | CP041431 |
| plasmid pSTEC316: | 80,029 bp | CP041432 |
REBASE acronym: EcoC316
Org_num: 38088
All begin FNE83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22510 | 65 aa hypothetical protein | |||
| 22515 | R | EcosS1ORF25140P (99% identity) | TGANNNNNNCTTC | EcoC316ORF22520P |
| 22520 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoC316ORF22520P |
| 22525 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoC316ORF22520P |
| 22530 | AAA family ATPase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1830 | cell division protein DamX | |||
| 1835 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC316DamP |
| 1840 | ribulose-phosphate 3-epimerase | |||
| 2360 | DUF2556 domain-containing protein | |||
| 2365 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoC316ORF2365P |
| 2370 | DNA-binding transcriptional regulator Fis | |||
| 9315 | TrmB family transcriptional regulator | |||
| 9320 | M | M.EcoFec101ORF18670P (99% identity) | M.EcoC316ORF9320P | |
| 9335 | 60 aa hypothetical protein | |||
| 10245 | TrmB family transcriptional regulator | |||
| 10250 | M | M.EcoC409ORF12550P (99% identity) | M.EcoC316ORF10250P | |
| 10270 | Shiga toxin Stx2 subunit A | |||
| 10440 | DUF1804 family protein | |||
| 10445 | M | M.Eco1172ORF11455P (100% identity) | M.EcoC316ORF10445P | |
| 10450 | 546 aa hypothetical protein | |||
| 14100 | 60 aa hypothetical protein | |||
| 14115 | M | M.EcoC367ORF10575P (100% identity) | M.EcoC316ORF14115P | |
| 14120 | TrmB family transcriptional regulator | |||
| 14700 | drug/metabolite exporter YedA | |||
| 14705 | V | V.EcosPA11DcmP (100% identity) | V.EcoC316DcmP | |
| 14710 | M | M.EcosPA11DcmP (100% identity) | CCWGG | M.EcoC316DcmP |
| 14715 | phosphohydrolase | |||
| 24490 | LexA family transcriptional regulator | |||
| 24495 | M | M.EcoEC0362ORF5955P (93% identity) | M.EcoC316ORF24495P | |
| 24500 | PerC family transcriptional regulator | |||
| plasmid pSTEC316 | ||||
| 26750 | 73 aa hypothetical protein | |||
| 26755 | M | M.Sen527ORF25750P (100% identity) | M.EcoC316ORF26755P | |
| 26760 | 59 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 22285 | 100 aa hypothetical protein | |||
| 22290 | R | EcoC367ORF12500P (100% identity) | GAACC | EcoC316ORF22295P |
| 22295 | M | M.SflN116ORF19490P (100% identity) | GAACC | M.EcoC316ORF22295P |
| 22300 | DEAD/DEAH box helicase | |||