Escherichia coli LD22-1 |
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Putative Escherichia coli LD22-1 RM systems
Ref: Li,R. and Wang,Z. unpublished
REBASE ref # 29320
| Sequence length: | GenBank #: | |
| Chromosome: | 4,775,730 bp | CP047876 |
| plasmid pLD22-1-MCR1: | 251,000 bp | CP047877 |
REBASE acronym: Eco221
Org_num: 38079
All begin GUU87_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19860 | DUF4942 domain-containing protein | |||
| 19865 | M | M.SsoSE61ORF6540P (100% identity) | GACNNNNNNRTAAY | M.Eco221ORF19865P |
| 19870 | S | S.SsoSE61ORF6540P (100% identity) | GACNNNNNNRTAAY | S.Eco221ORF19865P |
| 19875 | R | SflFF22ORF2075P (100% identity) | GACNNNNNNRTAAY | Eco221ORF19865P |
| 19880 | tyrosine-type recombinase/integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1695 | cell division protein DamX | |||
| 1700 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco221DamP |
| 1705 | ribulose-phosphate 3-epimerase | |||
| 2250 | DUF2556 domain-containing protein | |||
| 2255 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco221ORF2255P |
| 2260 | DNA-binding transcriptional regulator Fis | |||
| 8945 | phosphohydrolase | |||
| 8950 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco221DcmP |
| 8955 | V | V.SflFF64DcmP (100% identity) | V.Eco221DcmP | |
| 8960 | drug/metabolite exporter YedA | |||
| 14635 | replication endonuclease | |||
| 14640 | M | M.EcoLD261ORF455P (100% identity) | GATC | M.Eco221ORF14640P |
| 14645 | TraR/DksA family transcriptional regulator | |||
| 15275 | NinE family protein | |||
| 15280 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.Eco221ORF15280P |
| 15285 | recombination protein NinB | |||
| 17740 | 136 aa hypothetical protein | |||
| 17745 | R | Sso8033ORF3755P (100% identity) | Eco221ORF17750P | |
| ??? | M | M.EcoLD261ORF20230P (100% identity) | M.Eco221ORF17750P | |
| 17755 | 257 aa hypothetical protein | |||
| 17945 | LexA family transcriptional regulator | |||
| 17950 | M | M.EcoSC101ORFHP (100% identity) | GATC | M.Eco221ORF17950P |
| 17955 | PerC family transcriptional regulator | |||
| plasmid pLD22-1-MCR1 | ||||
| 23440 | DUF1173 family protein | |||
| 23445 | M | M.YpsF1ORFCP (100% identity) | M.Eco221ORF23445P | |
| 23450 | nuclease | |||
| 24055 | 108 aa hypothetical protein | |||
| 24060 | M | M.YpsF1ORFBP (100% identity) | M.Eco221ORF24060P | |
| 24065 | 202 aa hypothetical protein | |||
| 24170 | DNA-binding protein | |||
| 24175 | M | M.YpsF1ORFDP (100% identity) | M.Eco221ORF24175P | |
| 24180 | 284 aa hypothetical protein | |||