Escherichia coli LD93-1 |
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Putative Escherichia coli LD93-1 RM systems
Ref: Li,R. and Wang,Z. unpublished
REBASE ref # 29320
| Sequence length: | GenBank #: | |
| Chromosome: | 4,773,797 bp | CP047662 |
| plasmid pLD93-1-90kb: | 90,674 bp | CP047663 |
REBASE acronym: EcoLD931
Org_num: 38082
All begin GUU84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10710 | IS3 family transposase | |||
| 10715 | M | M.KpnLZORFCP (100% identity) | M.EcoLD931ORF10715P | |
| 10720 | S | S.Eco502CCORF22900P (100% identity) | S.EcoLD931ORF10715P | |
| 10725 | UPF0149 family protein | |||
| 10730 | R | Eco502CCORF22900P (100% identity) | EcoLD931ORF10715P | |
| 10735 | DUF45 domain-containing protein | |||
| 12930 | DUF45 domain-containing protein | |||
| 12935 | R | EcoZYB62ORF9405P (100% identity) | EcoLD931ORF12950P | |
| 12940 | UPF0149 family protein | |||
| 12945 | S | S1.EcoZYB62ORF9405P (100% identity) | S.EcoLD931ORF12950P | |
| 12950 | M | M.EcoZYB62ORF9405P (100% identity) | M.EcoLD931ORF12950P | |
| 12955 | 144 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2175 | 100 aa hypothetical protein | |||
| 2180 | R | EcoW619ORFAP (96% identity) | EcoLD931ORF2180P | |
| 2185 | HNH endonuclease | |||
| 13265 | drug/metabolite exporter YedA | |||
| 13270 | V | V.SsoSE61DcmP (100% identity) | V.EcoLD931DcmP | |
| 13275 | M | M.Ecou021DcmP (100% identity) | CCWGG | M.EcoLD931DcmP |
| 13280 | phosphohydrolase | |||
| 19560 | DNA-binding transcriptional regulator Fis | |||
| 19565 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoLD931ORF19565P |
| 19570 | DUF2556 domain-containing protein | |||
| 20170 | ribulose-phosphate 3-epimerase | |||
| 20175 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLD931DamP |
| 20180 | cell division protein DamX | |||
| plasmid pLD93-1-90kb | ||||
| 22920 | glutamine--tRNA ligase | |||
| 22925 | M | M.EcoM1586ORF26310P (100% identity) | M.EcoLD931ORF22925P | |
| 22930 | 226 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2160 | DEAD/DEAH box helicase family protein | |||
| 2165 | M | M.EcoXH990ORF24545P (100% identity) | M.EcoLD931ORF2165P | |
| 2170 | R | Ecos19ORF20250P (100% identity) | EcoLD931ORF2165P | |
| 2175 | 100 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8650 | tail fiber assembly protein | |||
| 8655 | R | EcoteDMcrBP (100% identity) | EcoLD931McrBP | |
| 8660 | R | EcosEC27McrCP (100% identity) | EcoLD931McrCP | |
| 8665 | isocitrate dehydrogenase | |||