Escherichia coli XDL |
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Putative Escherichia coli XDL RM systems
Ref: Cui,Y. et al. J Glob Antimicrob Resist 18, 26-27 (2019)
REBASE ref # 29339
| Sequence length: | GenBank #: | |
| Chromosome: | 5,134,250 bp | CP043033 |
| plasmid pXDL-2: | 108,364 bp | CP043035 |
| plasmid pXDL-CTX-M-14: | 224,961 bp | CP043034 |
REBASE acronym: EcoXDL
Org_num: 36814
All begin EOV66_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9920 | IS1 family transposase | |||
| 9925 | M | M.EcosEC21ORF13545P (100% identity) | M.EcoXDLORF9925P | |
| 9930 | GTPase family protein | |||
| 22225 | AAA family ATPase | |||
| 22230 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.EcoXDLORF22235P |
| 22235 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.EcoXDLORF22235P |
| 22240 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | EcoXDLORF22235P |
| 22245 | 65 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2255 | cell division protein DamX | |||
| 2260 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoXDLDamP |
| 2265 | ribulose-phosphate 3-epimerase | |||
| 2790 | DUF2556 domain-containing protein | |||
| 2795 | M | M.Ecost20ORFAP (100% identity) | ATGCAT | M.EcoXDLORF2795P |
| 2800 | DNA-binding transcriptional regulator Fis | |||
| 4550 | osmoprotectant transport activator ProQ | |||
| 4555 | M | M.SflFF24DndBP (100% identity) | M.EcoXDLDndBP | |
| 4560 | DNA phosphorothioation system sulfurtransferase | |||
| 4555 | DNA sulfur modification protein DndB | |||
| 4560 | M | M.SflFF24DndCP (100% identity) | M.EcoXDLDndCP | |
| 4565 | DNA sulfur modification protein DndD | |||
| 4560 | DNA phosphorothioation system sulfurtransferase | |||
| 4565 | M | M.SflFF24DndDP (100% identity) | M.EcoXDLDndDP | |
| 4570 | DNA sulfur modification protein DndE | |||
| 4565 | DNA sulfur modification protein DndD | |||
| 4570 | M | M.SflFF24DndEP (100% identity) | M.EcoXDLDndEP | |
| 4575 | DGQHR domain-containing protein | |||
| 4585 | 172 aa hypothetical protein | |||
| 4590 | R | EcosEC5DptHP (100% identity) | EcoXDLDptHP | |
| 4595 | DNA phosphorothioation-dependent restriction | |||
| 4590 | DNA phosphorothioation-dependent restriction | |||
| 4595 | R | SflFF24DptGP (100% identity) | EcoXDLDptGP | |
| 4600 | DNA phosphorothioation-dependent restriction | |||
| 4595 | DNA phosphorothioation-dependent restriction | |||
| 4600 | R | SflFF24DptFP (100% identity) | EcoXDLDptFP | |
| 4605 | integrase | |||
| 15365 | phage holin, lambda family | |||
| 15370 | M | M.EcoCT29ORF22190P (100% identity) | M.EcoXDLORF15370P | |
| 15375 | 67 aa hypothetical protein | |||
| 15400 | LexA family transcriptional regulator | |||
| 15405 | M | M.Eco21C11ORF21285P (98% identity) | GATC | M.EcoXDLORF15405P |
| 15410 | PerC family transcriptional regulator | |||
| 21245 | RM | EcoSECORF4829P (100% identity) | EcoXDLORF21245P | |
| 21250 | DEAD/DEAH box helicase | |||
| 21290 | HNH endonuclease | |||
| 21295 | R | EcoM1721ORFCP (96% identity) | EcoXDLORF21295P | |
| 21300 | 332 aa hypothetical protein | |||
| plasmid pXDL-2 | ||||
| 26250 | 102 aa hypothetical protein | |||
| 26255 | M | M.EcoSTEC636ORF25980P (99% identity) | SAY | M.EcoXDLORF26255P |
| 26260 | 73 aa hypothetical protein | |||
| plasmid pXDL-CTX-M-14 | ||||
| 25420 | DUF1173 domain-containing protein | |||
| 25425 | M | M.YpsF1ORFCP (100% identity) | M.EcoXDLORF25425P | |
| 25430 | thermonuclease family protein | |||
| 25985 | 108 aa hypothetical protein | |||
| 25990 | M | M.YpsF1ORFBP (100% identity) | M.EcoXDLORF25990P | |
| 25995 | 202 aa hypothetical protein | |||
| 26100 | DNA-binding protein | |||
| 26105 | M | M.YpsF1ORFDP (100% identity) | M.EcoXDLORF26105P | |
| 26110 | 284 aa hypothetical protein | |||