Escherichia coli YPE12 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli YPE12 RM systems
Ref: Li,R. et al. unpublished
REBASE ref # 29340
| Sequence length: | GenBank #: | |
| Chromosome: | 4,735,153 bp | CP041442 |
| plasmid pYPE12-106k: | 106,630 bp | CP041439 |
| plasmid pYPE12-122k: | 122,347 bp | CP041441 |
REBASE acronym: EcoYPE12
Org_num: 36816
All begin FNP80_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11390 | 410 aa hypothetical protein | |||
| 11395 | M | M.EcoPSJ14ORF18290P (100% identity) | M.EcoYPE12ORF11395P | |
| 11400 | S | S.EcoPSJ14ORF18290P (100% identity) | S.EcoYPE12ORF11395P | |
| 11405 | YecA family protein | |||
| 11410 | cold shock domain-containing protein | |||
| 11415 | R | Eco6D6ORF10425P (100% identity) | EcoYPE12ORF11395P | |
| 11420 | M48 family metallopeptidase | |||
| 21770 | IS3-like element IS2 family transposase | |||
| 21775 | M | M.EcoYPE3ORF20380P (100% identity) | M.EcoYPE12ORF21775P | |
| 21780 | S | S.EcoYPE3ORF20380P (100% identity) | S.EcoYPE12ORF21775P | |
| 21785 | R | EcoYPE3ORF20380P (100% identity) | EcoYPE12ORF21775P | |
| 21795 | NADPH-dependent aldehyde reductase Ahr | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3335 | cell division protein DamX | |||
| 3340 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoYPE12DamP |
| 3345 | ribulose-phosphate 3-epimerase | |||
| 3985 | DUF2556 domain-containing protein | |||
| 3990 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.EcoYPE12ORF3990P |
| 3995 | DNA-binding transcriptional regulator Fis | |||
| 11060 | phosphohydrolase | |||
| 11065 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoYPE12DcmP |
| 11070 | V | V.SsoSE61DcmP (100% identity) | V.EcoYPE12DcmP | |
| 11075 | drug/metabolite exporter YedA | |||
| 19635 | 379 aa hypothetical protein | |||
| 19640 | R | EcoYPE3ORF18250P (100% identity) | EcoYPE12ORF19645P | |
| 19645 | M | M.EcoYPE3ORF18250P (100% identity) | M.EcoYPE12ORF19645P | |
| 19650 | 257 aa hypothetical protein | |||
| 21740 | HNH endonuclease | |||
| 21745 | R | SflFF17ORF19275P (100% identity) | EcoYPE12ORF21745P | |
| 21750 | restriction endonuclease | |||
| plasmid pYPE12-106k | ||||
| 10 | 59 aa hypothetical protein | |||
| 15 | M | M.EcoST410ORF25360P (94% identity) | M.EcoYPE12ORF15P | |
| 20 | 73 aa hypothetical protein | |||
| plasmid pYPE12-122k | ||||
| 845 | 70 aa hypothetical protein | |||
| 850 | R | Ubap201ORF4P (100% identity) | CCWGG | EcoYPE12ORF855P |
| 855 | M | M.Ubap201ORF4P (100% identity) | CCWGG | M.EcoYPE12ORF855P |
| 860 | IS1 family transposase | |||
| 1130 | 102 aa hypothetical protein | |||
| 1135 | M | M.SspPIBORF23080P (100% identity) | M.EcoYPE12ORF1135P | |
| 1140 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pYPE12-106k | ||||
| 515 | mobilization protein MobX | |||
| 520 | R | SspS13ORF650P (100% identity) | EcoYPE12ORF525P | |
| 525 | M | M.SspS13ORF650P (100% identity) | M.EcoYPE12ORF525P | |
| 530 | 67 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21745 | HNH endonuclease | |||
| 21750 | R | EcoYPE3McrCP (100% identity) | EcoYPE12McrCP | |
| 21755 | R | EcoYPE3McrBP (100% identity) | EcoYPE12McrBP | |
| 21760 | DUF4942 domain-containing protein | |||