Escherichia coli PU-1 |
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Putative Escherichia coli PU-1 RM systems
Ref: Ma,J. and Yao,H. unpublished
REBASE ref # 29333
| Sequence length: | GenBank #: | |
| Chromosome: | 5,126,272 bp | CP042246 |
| plasmid pColV-PU1: | 285,922 bp | CP042245 |
REBASE acronym: EcoPU1
Org_num: 36799
All begin FQU83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23350 | restriction endonuclease | |||
| 23355 | R | EcosS1ORF16790P (99% identity) | CCANNNNNNNCTTC | EcoPU1ORF23360P |
| 23360 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoPU1ORF23360P |
| 23365 | S | S.EcoXMORF26160P (100% identity) | CCANNNNNNNCTTC | S.EcoPU1ORF23360P |
| 23370 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3555 | cell division protein DamX | |||
| 3560 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoPU1DamP |
| 3565 | ribulose-phosphate 3-epimerase | |||
| 4160 | DUF2556 domain-containing protein | |||
| 4165 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoPU1ORF4165P |
| 4170 | DNA-binding transcriptional regulator Fis | |||
| 7810 | PerC family transcriptional regulator | |||
| 7815 | M | M.Ecoppa1ORF22275P (100% identity) | GATC | M.EcoPU1ORF7815P |
| 7820 | LexA family transcriptional regulator | |||
| 8640 | DUF1382 family protein | |||
| 8645 | M | M.Sdy9753ORFBP (100% identity) | M.EcoPU1ORF8645P | |
| 8650 | PerC family transcriptional regulator | |||
| 12195 | phosphohydrolase | |||
| 12200 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoPU1DcmP |
| 12205 | V | V.SflC32DcmP (74% identity) | V.EcoPU1DcmP | |
| 12210 | drug/metabolite exporter YedA | |||
| 15500 | 73 aa hypothetical protein | |||
| 15520 | M | M.SboBSORF1444P (100% identity) | A | M.EcoPU1ORF15520P |
| 15525 | TrmB family transcriptional regulator | |||
| 18085 | replication endonuclease | |||
| 18090 | M | M.EcoXMORF5070P (100% identity) | GATC | M.EcoPU1ORF18090P |
| 18095 | TraR/DksA family transcriptional regulator | |||
| 20065 | LexA family transcriptional regulator | |||
| 20070 | M | M.EcosEC8ORF20220P (100% identity) | GATC | M.EcoPU1ORF20070P |
| 20075 | PerC family transcriptional regulator | |||
| 23125 | LexA family transcriptional regulator | |||
| 23130 | M | M.SflN101ORF11410P (100% identity) | GATC | M.EcoPU1ORF23130P |
| 23135 | PerC family transcriptional regulator | |||
| plasmid pColV-PU1 | ||||
| 240 | 73 aa hypothetical protein | |||
| 245 | M | M.EcoY18JORF350P (100% identity) | M.EcoPU1ORF245P | |
| 250 | 59 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8015 | 41 aa hypothetical protein | |||
| 8020 | R | EspFAAGmrSDP (100% identity) | EcoPU1GmrSDP | |
| 8025 | DinI family protein | |||
| 23345 | GTPase | |||
| 23350 | R | EcosS1MrrP (100% identity) | EcoPU1MrrP | |
| 23355 | type I restriction-modification system | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16405 | NinE family protein | |||
| 16410 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoPU1ORF16410P |
| 16415 | recombination protein NinB | |||