Escherichia coli O18:H1 CFSAN067215 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O18:H1 CFSAN067215 RM systems
Ref: Hoffman,M. et al. unpublished
REBASE ref # 27984
| Sequence length: | GenBank #: | |
| Chromosome: | 5,019,440 bp | CP028320 |
| plasmid p0.1229_1: | 114,229 bp | CP028321 |
| plasmid p0.1229_2: | 96,272 bp | CP028322 |
REBASE acronym: Eco67215
Org_num: 34306
All begin C7X15_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4495 | endoribonuclease SymE | |||
| 4500 | S | S.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | S.Eco67215ORF4505P |
| 4505 | M | M.EcoUTI89II (97% identity) | GAGNNNNNNNGTCA | M.Eco67215ORF4505P |
| 4510 | R | EcoUTI89IIP (100% identity) | GAGNNNNNNNGTCA | Eco67215ORF4505P |
| 4515 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1910 | cell division protein DamX | |||
| 1915 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco67215DamP |
| 1920 | ribulose-phosphate 3-epimerase | |||
| 4075 | integrase | |||
| 4080 | R | SflFF24DptFP (100% identity) | Eco67215DptFP | |
| 4085 | IS3-like element IS3 family transposase | |||
| 12305 | TrmB family transcriptional regulator | |||
| 12310 | M | M.EcoSCU125ORF5530P (100% identity) | A | M.Eco67215ORF12310P |
| 12330 | 73 aa hypothetical protein | |||
| 15945 | drug/metabolite exporter YedA | |||
| 15950 | V | V.EcosC25DcmP (100% identity) | V.Eco67215DcmP | |
| 15955 | M | M.SflC32DcmP (100% identity) | CCWGG | M.Eco67215DcmP |
| 15960 | phosphohydrolase | |||
| 24000 | Fis family transcriptional regulator | |||
| 24005 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco67215ORF24005P |
| 24010 | DUF2556 domain-containing protein | |||
| plasmid p0.1229_1 | ||||
| 25980 | 0 aa hypothetical protein | |||
| 25985 | M | M.Sfl0030ORFCP (100% identity) | SAY | M.Eco67215ORF25985P |
| 25990 | 73 aa hypothetical protein | |||
| plasmid p0.1229_2 | ||||
| 27040 | 0 aa hypothetical protein | |||
| 27045 | M | M.Sfl7ORF23565P (100% identity) | M.Eco67215ORF27045P | |
| 27050 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4250 | DUF4102 domain-containing protein | |||
| 4255 | R | EcoUTI89IP (100% identity) | CACAG | Eco67215ORF4260P |
| 4260 | M | M.EcoUTI89I (100% identity) | CACAG | M.Eco67215ORF4260P |
| 4265 | 52 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11320 | recombination protein NinB | |||
| 11325 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.Eco67215ORF11325P |
| 11330 | NinE family protein | |||